Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2857 ATGGCTGAACGTGGAGGAGGAGATCGTGGTGGTTTTGGCCGAGGATTTGGTGGCCGTGGTGGACGCGGTGATCGTGGTCGTGGAGGCCGCCGCAGAGCCGCCGGTCGCCGTGAAGAGGAGGAGAAATGGGTTCCAGTGACCAAACTAGGCCGTCTCGTCAAAGAGGGAAGGATTCGCAGCCTCGAGCAGATATACCTTCACTCTCTACCAATTAAAGAACATCAGATCATCGATACTCTGGTTGGTCCCAGCCTCAAGGACGAGGTCATGAAAATCATGCCTGTCCAGAAGCAGACCCGTGCCGGTCAGAGGACTCGCTTCAAGGCGTTCGTCGTCGTCGGCGACAACAACGGGCATGTGGGACTTGGTGTGAAGTGTAGCAAGGAAGTCGCCACCGCCATTCGTGGTGCTATTATATTGGCCAAGCTTTCGGTGATTCCTGTGAGAAGAGGTTACTGGGGTAACAAGATCGGAAAGCCCCACACCGTCCCTTGCAAGGTTACCGGAAAGTGTGGTTCAGTCACAGTACGCATGGTTCCTGCCCCTCGTGGTGCTGGAATCGTTGCTGCTAGGGTGCCCAAGAAGGTTTTACAGTTTGCAGGAATCGAGGATGTCTTTACCTCTTCCCGAGGATCGACTAAGACTCTTGGAAATTTCGTCAAGgcAACATTTGATTGTTTGATGAAAACATACGGGTTCCTGACACCTGAGTTCTGGAAGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACACAGATCTATTGGCAAAGCCAACAGGAAAGGCCCAAATCCTAGAGGAGGACAGGGTGGATGCTTGA 822 0.5268 MAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRAAGRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTGKAQILEEDRVDA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2857 273 MobiDBLite consensus disorder prediction 1 40 - -
Sto13g2857 273 ProSiteProfiles S5 double stranded RNA-binding domain profile. 85 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto13g2857 273 TIGRFAM uS5_euk_arch: ribosomal protein uS5 38 245 IPR005711 GO:0003735|GO:0006412|GO:0015935
Sto13g2857 273 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 241 IPR020568 -
Sto13g2857 273 Gene3D - 42 147 - -
Sto13g2857 273 Pfam Ribosomal protein S5, N-terminal domain 85 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto13g2857 273 PANTHER RIBOSOMAL S SUBUNIT 1 271 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto13g2857 273 Gene3D - 148 241 IPR014721 -
Sto13g2857 273 ProSitePatterns Ribosomal protein S5 signature. 102 134 IPR018192 -
Sto13g2857 273 SUPERFAMILY dsRNA-binding domain-like 81 150 - -
Sto13g2857 273 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 271 - -
Sto13g2857 273 MobiDBLite consensus disorder prediction 20 40 - -
Sto13g2857 273 Pfam Ribosomal protein S5, C-terminal domain 169 241 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2857 Sto-Chr13 33875350 33876695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2857 39 261 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.583 3.58e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2857 K02981 - gmx:100797105 468.774