Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2856 ATGGGGACTCCTGAATTCCCTGATCTAGGCAAGCATTGTAGCCTTGACAATTGCCACCAGCTAGATTTCTTGCCCTTCACCTGCGATCGCTGTCAAAAGATATACTGTTTGGAGCACCGCAGTTATATTAAACATAATTGTCCAAAAGCTGACATACAAGGTGTGACTGTGGTCATTTGTCCACTATGTGCCAAAGGAGTTCGCCTAATTCCTGATCAAGACCCAAACATAGCTTGGGATAATCATGTTAACATTGAGTGTGACCCATCAAATTATGAGAGAGccacaaagaagaaaaaatgccCTGCTCCTGGATGCAAAGAGATCTTAGTCTTCTCAAACACCATCAAATGCAGGGACTGCTTAATAGACCACTGTTTGAAGCACCGGTTCGGATCCGATCACAAGTGTCCCGGCCCTGCCAGAAAGTTGGAAACCAGTTTTTCATTCATGAGTTTCATGAACAAGAATGGATCAAAAACAGATTCAAAACCCAAATTAACTTCAACCACTTCTTCCAACTGGACCAGGAGCTTCCTTAATGTGGCTTCTAACATCCGAGCTTCCGCTGAAGCAGGCATGTCCAAATTGAGTGGTGAAATTAACCAAGCTTGGCAGATTGCAAGGGAAGGGTCAGCAGGAGGACAGAGCAGTAGTACTAGTGGTGGTGGTCAAGTGGAACAATGCCCTCAGTGTGGTGCCAAGTTTTGCTCAGTCACTAGTCTTGTTGATCATGTGCAGGAAGATCATGAAAGGAATCACACTGCAGCATCTGGTGGGGTGAAGAAGAAGCTCACCGTTGATGTCTGTCCTAAGTGTAGCAGAGGATTTCGAGACCCGGTGGACCTTGTGGAGCATGTTGAGAAGGATCATGGTGGTTCTTCAAATGTGTAG 894 0.4463 MGTPEFPDLGKHCSLDNCHQLDFLPFTCDRCQKIYCLEHRSYIKHNCPKADIQGVTVVICPLCAKGVRLIPDQDPNIAWDNHVNIECDPSNYERATKKKKCPAPGCKEILVFSNTIKCRDCLIDHCLKHRFGSDHKCPGPARKLETSFSFMSFMNKNGSKTDSKPKLTSTTSSNWTRSFLNVASNIRASAEAGMSKLSGEINQAWQIAREGSAGGQSSSTSGGGQVEQCPQCGAKFCSVTSLVDHVQEDHERNHTAASGGVKKKLTVDVCPKCSRGFRDPVDLVEHVEKDHGGSSNV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2856 297 ProSitePatterns Zinc finger C2H2 type domain signature. 270 291 IPR013087 -
Sto13g2856 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 296 IPR013087 -
Sto13g2856 297 Gene3D - 81 151 IPR035896 -
Sto13g2856 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 255 IPR013087 -
Sto13g2856 297 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 296 - -
Sto13g2856 297 SUPERFAMILY AN1-like Zinc finger 87 145 IPR035896 -
Sto13g2856 297 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Sto13g2856 297 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Sto13g2856 297 SMART c2h2final6 268 291 IPR013087 -
Sto13g2856 297 SMART c2h2final6 227 250 IPR013087 -
Sto13g2856 297 Gene3D - 2 57 IPR035896 -
Sto13g2856 297 Gene3D Classic Zinc Finger 198 296 - -
Sto13g2856 297 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 296 - -
Sto13g2856 297 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Sto13g2856 297 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Sto13g2856 297 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Sto13g2856 297 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Sto13g2856 297 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Sto13g2856 297 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2856 Sto-Chr13 33872803 33874369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2856 1 295 C2H2 Transcription Factor Family AT2G41835 60.811 7.69e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g2856 zf-AN1 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2856 - - vvi:100255506 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1305 8 8248493 8251186 Sto13g2856 13 33872803 33874369 CCT
Sto13g2856 13 33872803 33874369 Sto13g2856 13 33872803 33874369 ECH