Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2844 ATGGCTTCCTCTTCCTCTGATCCTCCCAAGTCCCACCTTCGCTGTGACCTCATCACTACTACTTCCGAGggtggcatgaagaaggatgatGACTTTTTGGTTTACAGAGAATTGAAGAAAGCCAAGAAAGAGAGAGGATGTACGGCCAAAGAACGCATCAGCAAGATGCCTCCTTGTGCTGCTGGCAAACGCAGCTCCATATATCGCGGTGTCACCAGGCATAGATGGACGGGTCGTTACGAAGCACATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGGAAGCAAGGGGCATATGATGATGAAGAGGCTGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCAGGGACTCTCATTAATTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATCTTTCAAGAGAAGAATACCTTGCATCTTTACGCCGGAAGAGCAGTGGCTTTTCAAGAGGAATCTCAAAATATCGCGGATTGTCCAGTCGATGGGAACCATCATATGGTCGTATGGCTGGATCTGACTACTTCAATAGTATACATTATGGTACAGGCAAAGATTCAGCTGCAGAAACAGAATATTTGAGTGGTTTCTGTGGAGACAGAAAAATTGATTTAACAGGCTACATCAAGTGGTGGGGATCTAGTAAAAGCCGCCAAACTGATCATTCCGGAACAAAATCATCATCGGAAGAAAAAAAGCGTCGTTTTGCCGGCGATTGTAGCAGTGAACTCAAAGCATTGGAACAGCAAGTCCAGCCTACTGAACCATACCAAATGCCACAGTTAGGAATAGCACATGATGAAAAAAAGCATAGAAGTTCTTCAGTTTCCGCCTTAAGTATCTTGTCGCGATCGGCTGCATACAAGAGCTTGCAAGAGAAAGCATCATCAAAGAGAGATGAAAATAGCACTACTGATGCTGATGAAAATGAGAACAAAAATACCATTAATAAGATGATTGACCGTGGAAAAGCAGTAGAGAAATCATCAAACCATGAGAGTGGAAATGAAGGACCTGAAGCTGCAATAATGGACATGAGTAGTGGAGCATTGTCTCTTCAAAGAAATGTTTACCCATTGCCTCCTTTCTTGTCTGCACCACTTTTGACAGCTTATAATAATACTGTTGACCCCTTATTAGATCCTGTTCTCTGGACCTCTCTTGCTCCTATACTTCCTCAGGTTACAAAGACGGAGGCTAGTTCATCTTACACCATGTTTGGGCCAGAGGAGTGA 1269 0.4247 MASSSSDPPKSHLRCDLITTTSEGGMKKDDDFLVYRELKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNLSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMAGSDYFNSIHYGTGKDSAAETEYLSGFCGDRKIDLTGYIKWWGSSKSRQTDHSGTKSSSEEKKRRFAGDCSSELKALEQQVQPTEPYQMPQLGIAHDEKKHRSSSVSALSILSRSAAYKSLQEKASSKRDENSTTDADENENKNTINKMIDRGKAVEKSSNHESGNEGPEAAIMDMSSGALSLQRNVYPLPPFLSAPLLTAYNNTVDPLLDPVLWTSLAPILPQVTKTEASSSYTMFGPEE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2844 422 Gene3D AP2/ERF domain 67 132 IPR036955 GO:0003700|GO:0006355
Sto13g2844 422 MobiDBLite consensus disorder prediction 226 250 - -
Sto13g2844 422 MobiDBLite consensus disorder prediction 304 345 - -
Sto13g2844 422 MobiDBLite consensus disorder prediction 302 352 - -
Sto13g2844 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 416 - -
Sto13g2844 422 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Sto13g2844 422 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Sto13g2844 422 ProSiteProfiles AP2/ERF domain profile. 67 130 IPR001471 GO:0003700|GO:0006355
Sto13g2844 422 MobiDBLite consensus disorder prediction 234 250 - -
Sto13g2844 422 PANTHER BNAA03G19580D PROTEIN 30 416 - -
Sto13g2844 422 Pfam AP2 domain 67 122 IPR001471 GO:0003700|GO:0006355
Sto13g2844 422 SUPERFAMILY DNA-binding domain 66 131 IPR016177 GO:0003677
Sto13g2844 422 SMART rav1_2 67 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2844 Sto-Chr13 33795984 33798893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2844 30 404 AP2-EREBP Transcription Factor Family AT2G41710 63.708 4.37e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2844 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2844 K09285 - gmx:100786651 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2844 13 33795984 33798893 Sto13g2844 13 33795984 33798893 ECH