Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2836 ATGGACAAGTTATTGAAGGATTTCGAGCTAGAGCACAAGAATCCGTCCGCCGAAGCCTTGAGGAGATGGAGATCCGCCGTCAGGTTGGTCAAGAACCCTCGGAGAAGGTTCCGCATGGTCGCCGATCTCGAAAAACGTCACGAAGCCGAGAAGATGAAGCAGAAAATCCAGGAAACGATTAGGATTGCTCTCTATGTTCAAAAGGCGGCATTGCAGTTTATTGATGGTACTGGTGGTCGAGTTGATTATAGTCTGTCAGAAGAGGCAAGAGAAGCTGGTTTTGGTATTAATCCAGATGACATTGCTTCCATTGTTCGTGGTCATGATTATAAAAAACTGAAATTAATTGGAGGGGTTGAAGGGGTTTCATCGAAATTATCTGTCTCAGTAGATGAAGGTGTCAGTGAAGATAATATAAACACCCGGCAACAGATATATGGGTTTAACCGTTATACGGAGAAACCTACGAGAACCTTCCTGATGTTTGTCTGGGAGGCACTGCATGACTTAACGCTAATCATTCTCATGGTTTGTGCTCTAGTATCTATAGGTGTAGGGATTGCCACCGAAGGGTGGCCAAAGGGTGTGTATGATGGTTTGGGAATCATACTTAGTATATTTTTGGTAGTGATTGTTACTGCTGTCAGTGACTACCAGCAATCGCTGCAGTTCAGGGAATTggataaagagaagaaaaagatcTTTGTTCATGTCACTAGGAACGGAAAAAGGCAAAAGATCTCAATTTATGATCTGGTAGTGGGAGATATTGTTCATCTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTTCATTTGGGGATATAACTTGCTGATCGATGAATCAAGTTTGTCAGGTGAGAGCGAACCAGTACATGTAAATGAAGAAAAACCTTTCCTTCTTTCAGGAACTAAAGTTCAAGATGGTCAGGCGAAGATGTTAGTGACAACTGTTGGCATGAGGACCGAATGGGGGAAGTTGATGGAAACTCTAAACGAGGGGGGAGAGGATGAGACGCCATTGCAGGTGAAATTGAATGGAGTTGCTACGATTATTGGTAAGATTGGTTTGGCTTTTGCTGTGCTGACATTTGTAGTGCTGTTAGTAAGGTTTCTGTGGGAAAAAGCAGCGCTTGGTCAGTTTACTAATTGGTCTTCAAATGATGCAATGAAGATGCTGGACTACTTTGCTATTGCTGTTACCATAATAGTTGTTGCCGTTCCTGAGGGATTACCATTGGCTGTAACACTCAGCCTTGCTTTTgcaatgaaaaaattaatgaatgacaAGGCACTCGTCAGGCATCTTGCTGCTTGTGAGACAATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACGAACCATATGGTGGTCGATAAAATATGGATATGCGAAAAAGCCACGGAGATCAAAGGTAAAGAGAGTGGAGACAAACTGAAAACCGAGATATCTGAAGACGTTCTGAACATCCTTTTCCAAGCTATATTTCAAAATACTTCTTCTGAAGTAGTCAAGGGTAAGGATGGAAAGAACACAATATTGGGAACACCAACAGAATCAGCACTATTGGAATTTGGCTTGTTTTTGGGCGGTGATTTTGATGCACAGCGCAGAGAGTACAAGATAGTTAAGATTGAGCCTTTCAATTCAGTCAGGAAGAAGATGTCTGTCCTCGTGGCTCTTCCTGATGGACGGGCACGAGCCTTCTGCAAGGGTGCATcagaaataatattaaaaatgtgtGACAAAGTTATTGATTGCAATGGAAATCCCATTGATCTTCCTGAAGATCAGGCAAAGAATATCTCTGATGTGATAAATGGTTTTGCCTCTGAAGCTTTAAGAACTCTTTGCTTGGCTGTAAAAGATATAGGACCAGAATTTCGAAATCTGTCTCCTGACCAAATGAAGGATATCATACCAAAAATTCAGGTAATGGCACGATCCTTACCGCTTGACAAACATACCTTAGTAACCCATTTGCGGAATATGTTTGGCGAGGTTGTCGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGCATAGCTGGAACCGAGGTTGCTAAAGAGAATGCTGATGTCATTATAATGGATGATAACTTCACAACTATTGTCAATGTGGCCAAATGGGGACGGGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTAAATGTAGTTGCTCTGGTGATCAACTTTGTTTCTGCATGCATCACAGgaTCTGCTCCTCTAACAGCTGTACAATTGCTATGGGTCAACTTGATCATGGACACTCTGGGTGCATTGGCACTCGCCACTGAGCCTCCTAACGAGGGACTCATGAATAGGGCCCCAGTTGGAAGAGGAACAAGCTTTATCACCAAAACCATGTGGAGGAACATCATTGGTCAAAGTATATATCAACTAGTTGTTCTTGGGATTCTCAATTTTGAGGGGAAGAGGCTTCTGGGACTTAGTGGTTCAAATGCAACTAGTGTCCTCAACACTATGATATTCAACTCCTTTGTCTTTTGCCAGGTATTTAATGAGATAAACAGCCGAGACATAGAGAAGATAAACATATTCAGAGGCATGTTTGACAGTTGGATATTTTTAGCAGTCATGTTTTCCACAGTGGTATTTCAAGTAATCATAGTGGAGTTCCTGGGAACTTTTGCCAGCACTGTGCCTCTGAACTGGCAACTATGGTTAGTTAGTGTGATAATTGGTGCAATTAGCTTGCCAATAGCTGCTATCGTCAAGTGCATTCCAGTCGATAGAGATGCTTCTAAACACCACCACGATGGCTATGAGGCACTGCCTTCTGGTCCTGAGATGGCTTAA 2886 0.4193 MDKLLKDFELEHKNPSAEALRRWRSAVRLVKNPRRRFRMVADLEKRHEAEKMKQKIQETIRIALYVQKAALQFIDGTGGRVDYSLSEEAREAGFGINPDDIASIVRGHDYKKLKLIGGVEGVSSKLSVSVDEGVSEDNINTRQQIYGFNRYTEKPTRTFLMFVWEALHDLTLIILMVCALVSIGVGIATEGWPKGVYDGLGIILSIFLVVIVTAVSDYQQSLQFRELDKEKKKIFVHVTRNGKRQKISIYDLVVGDIVHLSTGDQVPADGIFIWGYNLLIDESSLSGESEPVHVNEEKPFLLSGTKVQDGQAKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLAFAVLTFVVLLVRFLWEKAALGQFTNWSSNDAMKMLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLAACETMGSASCICTDKTGTLTTNHMVVDKIWICEKATEIKGKESGDKLKTEISEDVLNILFQAIFQNTSSEVVKGKDGKNTILGTPTESALLEFGLFLGGDFDAQRREYKIVKIEPFNSVRKKMSVLVALPDGRARAFCKGASEIILKMCDKVIDCNGNPIDLPEDQAKNISDVINGFASEALRTLCLAVKDIGPEFRNLSPDQMKDIIPKIQVMARSLPLDKHTLVTHLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNEGLMNRAPVGRGTSFITKTMWRNIIGQSIYQLVVLGILNFEGKRLLGLSGSNATSVLNTMIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLAVMFSTVVFQVIIVEFLGTFASTVPLNWQLWLVSVIIGAISLPIAAIVKCIPVDRDASKHHHDGYEALPSGPEMA 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2836 961 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Sto13g2836 961 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Sto13g2836 961 PRINTS P-type cation-transporting ATPase superfamily signature 678 697 - -
Sto13g2836 961 PRINTS P-type cation-transporting ATPase superfamily signature 702 714 - -
Sto13g2836 961 SUPERFAMILY HAD-like 627 726 IPR036412 -
Sto13g2836 961 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 634 IPR023299 GO:0000166
Sto13g2836 961 PRINTS Sodium/potassium-transporting ATPase signature 200 220 - -
Sto13g2836 961 PRINTS Sodium/potassium-transporting ATPase signature 443 464 - -
Sto13g2836 961 PRINTS Sodium/potassium-transporting ATPase signature 574 592 - -
Sto13g2836 961 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 632 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sto13g2836 961 Pfam E1-E2 ATPase 235 428 - -
Sto13g2836 961 Pfam Cation transport ATPase (P-type) 507 590 - -
Sto13g2836 961 Pfam Cation transporter/ATPase, N-terminus 118 182 IPR004014 -
Sto13g2836 961 Gene3D - 200 311 - -
Sto13g2836 961 Pfam Cation transporting ATPase, C-terminus 763 936 IPR006068 -
Sto13g2836 961 Gene3D - 15 75 - -
Sto13g2836 961 PANTHER CATION TRANSPORTING ATPASE 7 630 - -
Sto13g2836 961 PANTHER CATION TRANSPORTING ATPASE 631 946 - -
Sto13g2836 961 Gene3D - 312 462 - -
Sto13g2836 961 Gene3D - 691 939 - -
Sto13g2836 961 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Sto13g2836 961 PANTHER CALCIUM-TRANSPORTING ATPASE 631 946 - -
Sto13g2836 961 PANTHER CALCIUM-TRANSPORTING ATPASE 7 630 - -
Sto13g2836 961 Gene3D - 463 652 IPR023299 GO:0000166
Sto13g2836 961 SMART Cation_ATPase_N_a_2 109 187 IPR004014 -
Sto13g2836 961 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 939 IPR023298 -
Sto13g2836 961 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Sto13g2836 961 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto13g2836 961 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 645 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto13g2836 961 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2836 Sto-Chr13 33702929 33712426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2836 56 958 Primary Pumps ATPases AT3G57330 65.266 0.0 1247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2836 K01537 - csv:101206199 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1335 8 8502892 8514904 Sto13g2836 13 33702929 33712426 CCT
Sto13g2836 13 33702929 33712426 Sto13g2836 13 33702929 33712426 ECH