Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2805 ATGTCTGCGGAAGAGTCTCTGAGATCTCTATCGCTGGACTACCTGAACCTTCTGATCAACGGCCAGGCCTTCAGTGACGTCACCTTCAGCGTAGAAGGTCGTTTGGTCCACGCTCACCGATGCATCCTGGCGGCCCGAAGCCTGTTCTTCAGGAAATTCTTCTGCGCCCCTGACCCAGCTCCTTCCGGGCTTGACCCGGTGGGCTCTCGGGTCAACCCTACCGCCCCTCCCACTTGCAGGCCCGGCGTCATTCCCGTCAACTCCGTCGGCTATGAGGTCTTCTTGCTGCTTCTCCAGTTCTTGTACAGTGGGCAGGTCTCTATTGTTCCGCAGAAGCATGAGCCCAGGCCTAATTGTGGCCAGAGAGGTTGTTGGCACACCCATTGCACTTCTGCCGTTGATCTTGCTCTTGACACTCTCGCTGCCGCTAGATCCTTCGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAATTAGCAAGCATGGTAGAGAAGGCTTCCATAGAAGATGTGATGAAAGTGCTAGTGGCATCAAGAAAGCAAGACATGCACCAGCTGTGGGCCACCTGCTCCCACCTGGTAGCCAAATCAGGCCTCCCGCCCGAAGTGCTAGCCAAACACCTCCCCATCGACGTCGTCGCTAAGATCGAAGAGATCCGTCTCAAATCCTCCTACGCTCGCCGTTCCCTCTTAccgtaccaccaccaccaccacccccccccccacacCCTCGCCGACCTCGAGGACCAGAAAATCCGCCGCATGAAGAGAGCACTAGACTCCTCCGATGTGGAACTCGTGAAGCTCATGGTAATGGGAGAAGGCCTAAATCTGGACGAAGCCTTGGCCTTGCACTACGCGGTGGAGAATTGCAGCCGAGAAGTAGTGAAAGCGTTGCTGGAGCTGGGAGCGGCGGACGTGAACTACCCGGCGGGCCCCGCCGGGAAGACGCCGCTTCACATCGCGGCGGAGATGGTGTCGCCGGATATGGTGGCGGTTCTTCTGGACCACCATGCGGACCCGAATGTGCGGACGGTGGATGGGGTGACCCCACTGGACATATTGAGAACCCTAACGTCGGATTTTCTGTTCAAAGGGGCGGTGCCTGGGCTAACCCATATCGAACCGAACAAGCTGAGGCTGTGCCTGGAGTTGGTTCAATCGGCGGCTATGGTGATATCGCGAGAAGAAGGGAATAATCCTGCGAGTTCAGCGCCGATATATCCGCCAATGAGCGAAGACCATAGTAGCGGGAGCAGCAGTAATCTGAATTTGGTGTATCTGAATCTTGGTGCTACGGCTTCGGGACATGTCGTTTCGAGATTGGAGGGAGATGATGATAACCGTCATGGATCACAAGGAGGGTGTGACCCAACAATgtaccaccatcatcaccactcTCATCATGACTTCTAG 1416 0.536 MSAEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDPAPSGLDPVGSRVNPTAPPTCRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGQRGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLAKHLPIDVVAKIEEIRLKSSYARRSLLPYHHHHHPPPHTLADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAMVISREEGNNPASSAPIYPPMSEDHSSGSSSNLNLVYLNLGATASGHVVSRLEGDDDNRHGSQGGCDPTMYHHHHHSHHDF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2805 471 CDD BTB_POZ_NPR_plant 8 163 - -
Sto13g2805 471 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Sto13g2805 471 Pfam Domain of unknown function (DUF3420) 198 255 IPR024228 -
Sto13g2805 471 MobiDBLite consensus disorder prediction 441 471 - -
Sto13g2805 471 PANTHER REGULATORY PROTEIN NPR5 1 465 - -
Sto13g2805 471 Gene3D Potassium Channel Kv1.1; Chain A 3 196 IPR011333 -
Sto13g2805 471 Gene3D - 246 362 IPR036770 -
Sto13g2805 471 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
Sto13g2805 471 SMART BTB_4 25 163 IPR000210 GO:0005515
Sto13g2805 471 SUPERFAMILY POZ domain 9 192 IPR011333 -
Sto13g2805 471 SUPERFAMILY Ankyrin repeat 273 357 IPR036770 -
Sto13g2805 471 MobiDBLite consensus disorder prediction 397 416 - -
Sto13g2805 471 ProSiteProfiles BTB domain profile. 25 110 IPR000210 GO:0005515
Sto13g2805 471 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 465 IPR044284 GO:0099402
Sto13g2805 471 Pfam Ankyrin repeats (3 copies) 262 344 IPR002110 GO:0005515
Sto13g2805 471 ProSiteProfiles Ankyrin repeat region circular profile. 314 344 - -
Sto13g2805 471 SMART ANK_2a 314 343 IPR002110 GO:0005515
Sto13g2805 471 SMART ANK_2a 279 309 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2805 Sto-Chr13 33497380 33499873 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto13g2805 BTB 2.3e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2805 K14508 - qsu:112012060 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1403 8 8945305 8947627 Sto13g2805 13 33497380 33499873 CCT
Sto13g2805 13 33497380 33499873 Sto13g2805 13 33497380 33499873 ECH