Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2787 ATGTGTGCATTATTCCCTGATGTGTTCTCAGGCTTTGAATGGCCTTTATTTGATGAGTCGTTCACAAGTCTTAGTCATTACAATATTACTGATCAAAACTGCATCTACAAAGACACTCCTATTCCTCACAGTGTTGAGTTGAAGAATTCTTCCCCTGATCAGGCACTTCAGGTGCAAGACGAGGTTCAAAGGTGCTGTACACCATCATCACCTTCCCCAATTTCCCCTGATGCTGTTATGAGCAGCGACCCTTCCATGGCCAAGAAGCTTCACCACAATGCTAGTGAACGAGATCGTCGCAAGAAGATCAATTACTTGTATTCCTCACTTCGCTCAATGCTTCCTTTGTCCCATCAAACGAAGAAATTGAGTATTCCAGCTACGATTTCGCGAGTGGTGAAGTACATACCGGAGTTGGAGAAGGAAGTGGAAGGGCTtaggaagaaaaaggaaaagcttTTGTTGAGAATTTCTAGGGAAGGTGGAGAAGATGGTGCAGCATTAAGCAAAGCAAGGAAATTTGTGCATCACAACTCTGTAGTTTCCACAAGTAGCCTCAATGATAGCGAGGCCGTTATTCAGATTTCCTCTTATGACCTTCACAAAACTCCAATATCTCAAATATTGCTGTGTTTAGAAACACAGGGCCTTTTACTGCTCAATGCTTCTTCTTTCCACACCTTTGAAGGCAGAGTCTTCTATAATTTGCATTTCCAGGTAGAAAATAAGAACGGTAGATTAGAGTCAGACATTTTAAGCCGGAAGCTTTTGTCAATATTGTATGAGAAGAAGGAAGGCGTTTTTAATTTCTAA 813 0.4071 MCALFPDVFSGFEWPLFDESFTSLSHYNITDQNCIYKDTPIPHSVELKNSSPDQALQVQDEVQRCCTPSSPSPISPDAVMSSDPSMAKKLHHNASERDRRKKINYLYSSLRSMLPLSHQTKKLSIPATISRVVKYIPELEKEVEGLRKKKEKLLLRISREGGEDGAALSKARKFVHHNSVVSTSSLNDSEAVIQISSYDLHKTPISQILLCLETQGLLLLNASSFHTFEGRVFYNLHFQVENKNGRLESDILSRKLLSILYEKKEGVFNF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2787 270 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 260 IPR015660 GO:0003700|GO:0006357
Sto13g2787 270 Gene3D - 80 161 IPR036638 GO:0046983
Sto13g2787 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 156 IPR036638 GO:0046983
Sto13g2787 270 Coils Coil 136 156 - -
Sto13g2787 270 SMART finulus 93 145 IPR011598 GO:0046983
Sto13g2787 270 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 260 - -
Sto13g2787 270 Pfam Helix-loop-helix DNA-binding domain 88 140 IPR011598 GO:0046983
Sto13g2787 270 CDD bHLH_AtORG2_like 88 144 - -
Sto13g2787 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 139 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2787 Sto-Chr13 33385747 33386741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2787 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 37.868 1.78e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2787 HLH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2787 - - gmx:100803424 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2787 13 33385747 33386741 Sto13g2787 13 33385747 33386741 ECH