Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2760 ATGGAAGAAGACGATGACTTCGTCGACCCAACTGACCAAGCTTCACAGTCCTTATCTTCTTCGTCCGAAACTTACTTGCTTGGTTTTGTCTGTGCCAACATCGTTGGTATTAAATACTATTCCGGCACCATCAGTGGCCGTGAAATGGTAGGTCTCGTCCGTGAACCTCTCAATCCCTACGATCAGAACGCCATTAGGGTCCTCAACACCCGAACCGTTCAGGTTGGACATATCGAACGCTCCGTCGCAGCCGTACTGTCTCCTCTGATAGACGCTAACCTAATCGTCGTCGAAGGCATTGTGCCCAAATCGCGCGCTCGTAACCAATTCAAAATTCCTTGCCAAATTCACATATTTGCGGCGATTGAGGCTTTTCCAACCGTGAAAGAGGTGATTTCAGATGGTGGGTTACCGTTAATTTCAGAATCTAATGCCTCGTTTGCGTTGTCAGAGTCTATGGCCGTGAAAGAGAAAAGGGATAAGAGCAGTTATAAGACTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATGTCAGCAAAAGTTGTGCATTAGAAGCGTTGGAGCCCCCAAGAAGTGTTATTAAAACCGACCTTTTTGTGCATCAAAAGGAAGCGTTGGGATGGTTAGTTCATAGGGAGAATTCTGGTGACTTGCCGCCATTTTGGGAAGAGAAAGATGGAGCCTTTGTGAATATTTTGACTAATTATAGTACGGATGTAAGGCCGGAGCCTCTGAGAGGTGGTATTTTTGCTGATGATATGGGATTGGGTAAGACTTTAACTTTACTTTCTTTGATTGCTCTTGATAAGGATCCTAGTGCACGAAACAAAGAGAAGTGTTATGAGACGGGGGAGCTGGATGAAGGATTCTCTGGTTCAGGTGGTAAAAAGGGTAAGAGGAGAGGAGCAAATAAAAAGGCCACTGGGTCACAAAAGAGACGCAAGACTGAGAGCACTCCTTCTGGGGCCCTTGGTAAAGGAAAATCTGTTGTAGATGGCATAACCGCCACTCTCACAGATATAAAGACGACATTGGTTGTGTGTCCCCCGTCTGTATTTTCAACATGGATAAAGCAGCTAGAAGAGCATACTAAATCTGGCACACTGAAGACATACATGTATTATGGTGATAGAAGGACCAACGATGCTGAGGAACTTAAGATGTATGATTTAGTTTTAACTACATATACCACTTTATCTAGTGAAGAAGTTTTGGAATGCTCACCTATAAAGAAAGTAGAGTGGTGGAGAGTTATTCTAGATGAAGCACATATTATCAAGAATGCCAGTGCTAAACAAAGTCAAGCTGTCATGAATTTGGTTGCTAAGCGGAGGTGGGCAGTTACAGGGACACCCATTCAAAATGGTTCACAAGATCTATTTGCTCTCATGGCATTTTTACACTTTGAACCATTTTCAATAAAGAACTATTGGCAGGGGTTGGTGCAACGTCCTCTTGCTCAAGGCAACAATAGTGGACTCTCACGTTTGCAGGTTTTGATGGCAACAATTTCAATGCGAAGAACAAAAGATAAAGAGTTGATAGGATTACCTAAAAAAACCATTGACACTTGTTATGTTGAACTTCTAAAGGAAGAGCGTGAATTGTATGATCAAATGGAAGAGAAAGCAAAGAAAACAGTGCAAGGTTATATAAATGATGGTGGTCTAATGCTCAACTATTCCAATGTACTTCGTATGATTTTACTACTCCGCCAAATTTGTACTGACAAGGCATTGTGCCCTTCCGATCTCATATCTCTACTCCCTTCAAATAACATTGAAGATGTTTCCAATAACCCGGAGTTGCTGCAAAAGCTGGTTGAATTATTGCAAGATGGTGAAGATTTTGACTGCCCCATATGTATTTCTCCACCAACTGATGTTGTGATTACATGTTGTGCTCACATTTTCTGCCGAGCCTGTATTCTGAAAACTCTACAGCGCAGCAAATCCTGTTGTCCCCTTTGTCGTCGTGCCCTCACCGAATCTGACTTGTTCTCTGCCCCTCCTCAATCTTCTGAGGCTGATTGTAATGGATTCTCCTCGTCTGGAACAAGCTTATCCTCTAAAGCAGCCGCTcttttgaaacttcttgtggcCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCACAATTTCGTAAGATGCTGATGTTACTGGAAGAGCCACTGAAAGCTGCTGGTTTCAAGACTCTGCGTCTTGATGGTACCATGAATGCAAGACGCAGGGCTAAAGTTATTGAGGAATTTGGAGTCCCAGGAACAGATGGGCCCACTGTTCTGTTGGCCAGCCTTAAGGCCTCAGGCACAGGTATAAATCTCACAGCCGCCTCCAGGGTGTACTTGTTCGAGCCATGGTGGAACCCAGCAGTGGAGGAACAAGCAATGGATCGTGTGCACCGCATTGGACAGAAAGAGGAGGTGAAGATTGTGAGATTAATTACTAAAGACAGCATTGAAGAGAGGATACTGAAATTGcaggagaagaagaagcaattTGCAAGGGAAGCATTTGGAAAGCGGGGAGCAAAGGGTCTTCGTGAAGTTGGAGCAGATGATCTCCGTATCCTTATGTCCTTGTGA 2595 0.4304 MEEDDDFVDPTDQASQSLSSSSETYLLGFVCANIVGIKYYSGTISGREMVGLVREPLNPYDQNAIRVLNTRTVQVGHIERSVAAVLSPLIDANLIVVEGIVPKSRARNQFKIPCQIHIFAAIEAFPTVKEVISDGGLPLISESNASFALSESMAVKEKRDKSSYKTVDEIFKLVDENVSKSCALEALEPPRSVIKTDLFVHQKEALGWLVHRENSGDLPPFWEEKDGAFVNILTNYSTDVRPEPLRGGIFADDMGLGKTLTLLSLIALDKDPSARNKEKCYETGELDEGFSGSGGKKGKRRGANKKATGSQKRRKTESTPSGALGKGKSVVDGITATLTDIKTTLVVCPPSVFSTWIKQLEEHTKSGTLKTYMYYGDRRTNDAEELKMYDLVLTTYTTLSSEEVLECSPIKKVEWWRVILDEAHIIKNASAKQSQAVMNLVAKRRWAVTGTPIQNGSQDLFALMAFLHFEPFSIKNYWQGLVQRPLAQGNNSGLSRLQVLMATISMRRTKDKELIGLPKKTIDTCYVELLKEERELYDQMEEKAKKTVQGYINDGGLMLNYSNVLRMILLLRQICTDKALCPSDLISLLPSNNIEDVSNNPELLQKLVELLQDGEDFDCPICISPPTDVVITCCAHIFCRACILKTLQRSKSCCPLCRRALTESDLFSAPPQSSEADCNGFSSSGTSLSSKAAALLKLLVASRDQHPATKSVVFSQFRKMLMLLEEPLKAAGFKTLRLDGTMNARRRAKVIEEFGVPGTDGPTVLLASLKASGTGINLTAASRVYLFEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLITKDSIEERILKLQEKKKQFAREAFGKRGAKGLREVGADDLRILMSL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2760 864 Pfam Zinc finger, C3HC4 type (RING finger) 619 657 IPR018957 GO:0046872
Sto13g2760 864 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 338 864 - -
Sto13g2760 864 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 11 278 - -
Sto13g2760 864 SUPERFAMILY RING/U-box 602 664 - -
Sto13g2760 864 Coils Coil 820 840 - -
Sto13g2760 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 854 IPR001650 -
Sto13g2760 864 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 338 864 - -
Sto13g2760 864 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 11 278 - -
Sto13g2760 864 Pfam SNF2-related domain 201 579 IPR000330 GO:0005524|GO:0140658
Sto13g2760 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 845 IPR027417 -
Sto13g2760 864 SMART HIRAN_2 27 122 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sto13g2760 864 SMART ring_2 619 657 IPR001841 -
Sto13g2760 864 ProSiteProfiles Zinc finger RING-type profile. 619 658 IPR001841 -
Sto13g2760 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 685 IPR013083 -
Sto13g2760 864 Pfam Helicase conserved C-terminal domain 691 807 IPR001650 -
Sto13g2760 864 Gene3D - 170 283 IPR038718 -
Sto13g2760 864 CDD SF2_C_SNF 705 818 - -
Sto13g2760 864 SMART helicmild6 722 807 IPR001650 -
Sto13g2760 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 470 IPR014001 -
Sto13g2760 864 Gene3D - 322 509 IPR038718 -
Sto13g2760 864 Pfam HIRAN domain 28 117 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sto13g2760 864 ProSitePatterns Zinc finger RING-type signature. 634 643 IPR017907 -
Sto13g2760 864 Gene3D - 518 862 IPR027417 -
Sto13g2760 864 MobiDBLite consensus disorder prediction 285 326 - -
Sto13g2760 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 502 IPR027417 -
Sto13g2760 864 Gene3D - 19 139 - -
Sto13g2760 864 SMART ultradead3 194 477 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2760 Sto-Chr13 33218959 33223849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2760 1 864 RAD5 or RAD16-like Gene Family AT5G05130 63.176 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto13g2760 SNF2_N 6.7e-75 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2760 K15711 - vvi:100263696 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2760 13 33218959 33223849 Sto13g2760 13 33218959 33223849 ECH