Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2759 ATGAAGTCCGGGTCACTAGATTACTGGAGGAATTACTTTCGAACCGCAAATTCTGATATATTCGATATAATAGACCATGCGATCTTGGTGGCCGTTTCGGATTGCCCAAAGGAGTTTAGATTGCGAAGGGAGGGTATTGCAGAGCGTTTGTTTTCCTGTAAATTGAGTCGTTGTTTGGGGTGTGATCGAGTGGAGTTGGCGGTGCCTTGTGATGAGGAGGAATATGGAGGTTGTAAGACTGGTTTTGACAGAGATGGTACTGAATTCGAAGCAGGAGCTAGTAAAGAGAGCAAGGTCAATAGTAGCAGAGACGATCATGGAGAGATGAACATGAACCAAGTTAGTAATTTCAGCTTTGGAGATGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGATGGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTCATAACAGCGAAGTGCTTTGTTCCATGTTACTGCAGTCTGATTCAGTGTTGTTTGAGTCATTGAGGAGGCTCCAGCTTCTGGCGCTGACAGTGGATCTTCTTAAGGGAACTGAGATTGGAAAAGCTGTCAATCCTCTTCGAAAACATGGATCAAAGGAGATTCGTCAACTTGCACGGACTCTTATAGATGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGGCCACAGCAGCTATTTCAGGAACTGTAGGTTCAGAAAGTACTCCAGATTCTGTGAATCCATCTGTTGTTGATGAAGAGGAAGGGCTTCCATCACCTCCAATGGATGATGCTTTCTTTGCAGCTCCAACTGGTTCAATGGAACTCTCTCAGTTCTTTGATggcatggatgatgatggaaATTTTCGACAGACTGGAGAATTCACCAGGATCCGTGAACATATCAGTAAACCATCTGTGGACAGTCAAAACATAGCGAAGAGAAAACCACAGGCCTCCAATGAGGCCAAGGAGAGTAAGAGTAATCAAGCAAAGAAGAATGAGGTTGCTATGAGACTAAATAAACCAGTCATTTCTGAATCTGGCCCTGGCAGACCACCCAAATCGAACGTGCAGCAAAAAAGCAACACAGGGCCAAAGATGCAGCAAAAAGTAGATAGGAATGTTATCCCGAAGAGGCCGCTCGTTAGTCAGCAAGATAAATTCAAGTGTTCGGACGATGCATCAGTGCAAGTGAAGCTAGAAGCCACTAAGAGGAAACTTCAAGAGTCTTATCAACAAGCGGAAAATGCCAAGAGGCAGAGGACAATACAAGTCATGGAGTTGCATGATCTCCCAAAGCAAGGGAATGGCCACCGAAATCCACACATGAAACCCGGCAACAATAACCGGCACTGGGCTCACGGACGAAGATAG 1353 0.4435 MKSGSLDYWRNYFRTANSDIFDIIDHAILVAVSDCPKEFRLRREGIAERLFSCKLSRCLGCDRVELAVPCDEEEYGGCKTGFDRDGTEFEAGASKESKVNSSRDDHGEMNMNQVSNFSFGDAEALTDEIEEESQMVGEVLRIKEILHNSEVLCSMLLQSDSVLFESLRRLQLLALTVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKEMVDEWVKATAAISGTVGSESTPDSVNPSVVDEEEGLPSPPMDDAFFAAPTGSMELSQFFDGMDDDGNFRQTGEFTRIREHISKPSVDSQNIAKRKPQASNEAKESKSNQAKKNEVAMRLNKPVISESGPGRPPKSNVQQKSNTGPKMQQKVDRNVIPKRPLVSQQDKFKCSDDASVQVKLEATKRKLQESYQQAENAKRQRTIQVMELHDLPKQGNGHRNPHMKPGNNNRHWAHGRR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2759 450 MobiDBLite consensus disorder prediction 310 324 - -
Sto13g2759 450 MobiDBLite consensus disorder prediction 344 362 - -
Sto13g2759 450 Coils Coil 390 417 - -
Sto13g2759 450 MobiDBLite consensus disorder prediction 289 369 - -
Sto13g2759 450 Pfam TFIIS helical bundle-like domain 167 215 IPR017923 -
Sto13g2759 450 SMART TFS2_5 136 217 IPR003617 GO:0005634
Sto13g2759 450 ProSiteProfiles TFIIS N-terminal domain profile. 137 218 IPR017923 -
Sto13g2759 450 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 225 IPR035441 -
Sto13g2759 450 MobiDBLite consensus disorder prediction 228 255 - -
Sto13g2759 450 MobiDBLite consensus disorder prediction 424 450 - -
Sto13g2759 450 CDD TFIIS_I 138 216 - -
Sto13g2759 450 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 227 IPR035441 -
Sto13g2759 450 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 449 IPR044805 -
Sto13g2759 450 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2759 Sto-Chr13 33202774 33205549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sto13g2759 Med26 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2759 - - gmx:100775579 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2759 13 33202774 33205549 Sto13g2759 13 33202774 33205549 ECH