Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2746 ATGTCTGAAAGAATGAGTGAGGGAGATTCTGTGGACAGAAAGCTGAAGGGCAGGcttgaggaggaggaagagaaggagaagaaggaggagggagaagaagaggaggaacatTTTCTGTCTCTGGGGCTTGGAAGCAGCAGCAGCAAAATTGATATGTCTAAGCCATTGATGAGAGTGCCATCTTCCTCATCATCATCTGGAGGTTCTAATGCTGCTTTTGGAGCAAACGGAGTGGAAGGGAGGGAATTTGAGTGCAAGTATTGCAGGAAGAAGTTTAAGAGCTCACAGGCACTTGGAGGGCACCAGAATGCTCATAGGAGGGAAAGGGTTCTGTCCAGAATGGAGAAGGAATTTGGGGCTTATTCTTCTGCTTTGAATCATGCCTATGGCCATCATTATCAAGGTCAAGGGATACCCATACCTAGACCCAATTCATCTCTTGGGACGACCAATTCATGGAATGTGAATCCACAGGAAAACAATCATCACTATTTGGAGATTCCAGGGAACTCATCATCATCCTCTTCGGATGTCAACTTGTCCCTCAGTCTCTGA 555 0.4126 MSERMSEGDSVDRKLKGRLEEEEEKEKKEEGEEEEEHFLSLGLGSSSSKIDMSKPLMRVPSSSSSSGGSNAAFGANGVEGREFECKYCRKKFKSSQALGGHQNAHRRERVLSRMEKEFGAYSSALNHAYGHHYQGQGIPIPRPNSSLGTTNSWNVNPQENNHHYLEIPGNSSSSSSDVNLSLSL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2746 184 Gene3D Classic Zinc Finger 75 128 - -
Sto13g2746 184 MobiDBLite consensus disorder prediction 139 184 - -
Sto13g2746 184 MobiDBLite consensus disorder prediction 41 71 - -
Sto13g2746 184 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Sto13g2746 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Sto13g2746 184 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Sto13g2746 184 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 150 IPR044246 GO:0009788
Sto13g2746 184 MobiDBLite consensus disorder prediction 1 71 - -
Sto13g2746 184 MobiDBLite consensus disorder prediction 1 39 - -
Sto13g2746 184 Coils Coil 12 36 - -
Sto13g2746 184 Pfam C2H2-type zinc finger 83 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2746 Sto-Chr13 33112531 33113424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2746 78 130 C2H2 Transcription Factor Family AT5G25160 52.830 3.28e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g2746 zf-C2H2_6 6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2746 - - cam:101505119 75.0997