Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2738 ATGGCTCATTCGTCCGAACCATCCTCATCCTTGAGTTTTACATCATCTTCCTATATATCCAATGGATCAGTTAGCCACAACATATGCTCTTCTCATTGCCCTGATCCTGGACCCAACCTTGAAGCAATCAGCTTGAGTAAGCTTAGCTCTAATTTGGAGCAGCTTTTGGTTGATTCTGATTGTGATTACAGTGATGCTGACATCATTGTTGAAGAAACTCCAGTTGGTGTTCATCGATGTATTCTTGCCTCTAGAAGTAAGTTTTTTCGTGAGTTATTCAAGAGGGAGAAAGGATCTTCAGAGAAAGAAGGCAAATTGAAGTATTGCATGAGTAATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTTCTCATATTTTTGGGATATATGTATACTGGGAAACTCAAGCCCTCCCCAATGGAGGTATCAACTTGTGTTGACAATGTATGTGCCCATGATGCTTGTAGACCTGCTATTAACTTTGCTGTGGAGCTGATGTACGTCTCTTCCATTTTCCAAATACCAGAGCTGGTATCACTTTTCCAGCGACGCCTCCTTAACTTTGTTGGGAAGGCTCTTGTGGAAGATGTCATACCAATCCTCCTTGTTGCTTTCCATTGTCAGTTGAGTCAACTTGTCGCTCAATGCGTTGATAGGGTGGCACGATCAGACCTTGACTATGTCTCAATTGAGAAAGAGGTTCCCCTTGAACTAtcagaaaaaattaaattgctCCAGCGCAGCTTCCAGCATGATGCCGAAAATGATGCTCCTTTAGTGGATCCATTGCATCAAAAGAGAATAACTAGAATACACAAGGCATTGGACTCAGATGACGTTGAGCTTGTTAAACTACTTTTAACGGAGTCAGATATAACTTTAGATGAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGATCCTAAGGTTGTCTCTGAGGTACTTGGCTTGGGTCTGGCTGATGTAAATCTTCGGAATTCTCGTGGATACACTGTGCTTCATATTGCTGCCATGCGTAAAGAGCCTTCACTTATAGTATCACTTCTTACAAAAGGGGCTTGTGCATCAGAATTGACTTTGGATGGTCAGAGTGCTGTTAGTATCTGCAGGAGGTTAACAAGGCCTAAGGATTATCATGCAAAAACAGAACAGGGGAAGGAAACAAACAAAGATCGAATATGTATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCAATGGCTGGGGACGTCTCTATATCTTCTCAAACAATTGCTGATGATCTGCACATGAAGCTGCTATACCTTGAGAACAGAGTGGCATTTGCAAGATTGTTCTTCCCTACGGAAGCCAAACTAGCCATGGACATCGCACATGCTGAGACAAAAAGTTCAAGTGGGAATTTCAGGGAGGTTGATCTTAATGAGACTCCCATAATGCAGAACAAAAGACTATTTTCTAGGATGGAAGCCCTTATGAAAACAGTGGAGATGGGCCGGAGATACTTTCCTCATTGCTCAGAAGTGCTGGATAAGTTCATGGAGGATGACCTGCCTGATGTGTTTTACCTTGAGAAGGGTTCTGAAGAAGAGCAAAGACTCAAGAGGACGCGTTTCATGGAGCTTAAAGATGATGTTCAAAAGGCTTTCAATAAGGACAAAGCCAAGTTTTGCCGCTCTGGGATTTCTCCTTCATCATCCTCATCATCCCTGAAGGACTCTCTTCATCACAAGGCTAGAAAAGTGTGA 1734 0.4227 MAHSSEPSSSLSFTSSSYISNGSVSHNICSSHCPDPGPNLEAISLSKLSSNLEQLLVDSDCDYSDADIIVEETPVGVHRCILASRSKFFRELFKREKGSSEKEGKLKYCMSNLLPYGKVGYEAFLIFLGYMYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYVSSIFQIPELVSLFQRRLLNFVGKALVEDVIPILLVAFHCQLSQLVAQCVDRVARSDLDYVSIEKEVPLELSEKIKLLQRSFQHDAENDAPLVDPLHQKRITRIHKALDSDDVELVKLLLTESDITLDEANALHYAAAYCDPKVVSEVLGLGLADVNLRNSRGYTVLHIAAMRKEPSLIVSLLTKGACASELTLDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDVSISSQTIADDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAETKSSSGNFREVDLNETPIMQNKRLFSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDVFYLEKGSEEEQRLKRTRFMELKDDVQKAFNKDKAKFCRSGISPSSSSSSLKDSLHHKARKV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2738 577 SMART BTB_4 64 190 IPR000210 GO:0005515
Sto13g2738 577 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Sto13g2738 577 SUPERFAMILY Ankyrin repeat 258 373 IPR036770 -
Sto13g2738 577 SUPERFAMILY POZ domain 50 188 IPR011333 -
Sto13g2738 577 MobiDBLite consensus disorder prediction 553 577 - -
Sto13g2738 577 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Sto13g2738 577 CDD BTB_POZ_NPR_plant 47 190 - -
Sto13g2738 577 Gene3D - 264 404 IPR036770 -
Sto13g2738 577 SMART ANK_2a 267 295 IPR002110 GO:0005515
Sto13g2738 577 SMART ANK_2a 296 326 IPR002110 GO:0005515
Sto13g2738 577 SMART ANK_2a 330 362 IPR002110 GO:0005515
Sto13g2738 577 Pfam BTB/POZ domain 62 144 IPR000210 GO:0005515
Sto13g2738 577 PANTHER REGULATORY PROTEIN NPR3 10 565 - -
Sto13g2738 577 PANTHER REGULATORY PROTEIN NPR3 10 565 IPR044292 GO:0009862|GO:2000022|GO:2000031
Sto13g2738 577 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Sto13g2738 577 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Sto13g2738 577 Pfam NPR1/NIM1 like defence protein C terminal 372 564 IPR021094 -
Sto13g2738 577 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2738 Sto-Chr13 33063558 33066590 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto13g2738 NPR1_like_C 6.5e-87 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2738 K14508 - gmx:100217338 954.125