Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2733 ATGGATCCTCTCAGGTTGCAGAAGATAAGAAAGAAATTGGCGATGCTGAATTACCCAAGAGCCAATGCCCCTGCGCAGTCCCTCCTTTTTGCTGGGATGGAGCGCTATGCCCTTTTGGAGTGGCTCTTCTTCCGGCTATTAGGTGATAAATCACCTTTTTCTCAGCAAAACTTACAAGGGGATGTTTTGGATCGTGACGAAGAGACTGCCCGCATTCAGTATTTAGCAGAGATTGCTAAATTTCTGGGTATTACGACTACTATTGATACGGAAGCCATTCAGGGACGTGGAAGCTATGAGGACCGGACTGAAATGCTTCAACTTATTGTAGATCTAGTGGAGGCGAGCATTTATGCTGATAATGCAGAATGGAGTGTGGACGAGCAGGTAGCAAAGGATATACAATTGATAGATTGCATTGCAGAGAAGCAAGCCCAAATTTTTTCTGAAGAATGCAAGTTGTTTCCTGCAGATGTTCAGATTCAATCCATTTATCCACTGCCAGATGTTTCCGAGCTGGAGTCAAAGCTTTCTGAACAATCAAAAATATTGTTGAATCTTCAACAGAAAGTCGATGATTTGGCATCAAAGCATGCTTATAATCCAGACGAGGAGTACACTGAGGTGGAAGCCCAACTGCGGGCACATTTGGAATCATTTCTAGAAACTGCTAGAACATTCAATATGATTTACACCAAGGAAATTCGTCCATGGACACACATGATGGAGGTACCACAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCTTACAAGATGCTTTTGAAGTTTCTTGGTAACCTGAGGAATCTTAGAGACTCACATGCAGCTCTTGCTGTTGGATCTTCTGAGACAACCGGAGAGCCTTCTTCTGTTACAAGGATAATATCTGAATGTGAATCTGCACTCACAGTCTTAAATCGTGATCTTGGAATTCTATCAGCATCCATTGATCGTGAACGCGGAGGAAAGATGATTTGCTACGTTGTTGTCACCAAATATGTCTTAAAGAGGGTTCTCCAGAACGACATCGATTTGCTCAACCCTCCTGCTGAGatcgagaagaagaagcacAAGCTTAAGCGTCTCGTGCAATCTCCTAATTCGTTTTTCATGGACGTAAAATGTCAAGGATGCTTCAATATAACCACTGTATTCAGCCACTCCCAAACGGTCGTAGTTTGTGGGAATTGCCAGACGGTTTTGTGTCAGCCTACTGGTGGCCGAGCTAGGCTAACAGAGGGCTGCTCTTTTAGAAAGAAGGGAGATTAG 1281 0.4309 MDPLRLQKIRKKLAMLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNLQGDVLDRDEETARIQYLAEIAKFLGITTTIDTEAIQGRGSYEDRTEMLQLIVDLVEASIYADNAEWSVDEQVAKDIQLIDCIAEKQAQIFSEECKLFPADVQIQSIYPLPDVSELESKLSEQSKILLNLQQKVDDLASKHAYNPDEEYTEVEAQLRAHLESFLETARTFNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAVGSSETTGEPSSVTRIISECESALTVLNRDLGILSASIDRERGGKMICYVVVTKYVLKRVLQNDIDLLNPPAEIEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2733 426 Pfam Ribosomal protein S27 370 424 IPR000592 GO:0003735|GO:0005840|GO:0006412
Sto13g2733 426 ProSitePatterns Ribosomal protein S27e signature. 378 410 IPR000592 GO:0003735|GO:0005840|GO:0006412
Sto13g2733 426 Coils Coil 170 190 - -
Sto13g2733 426 Pfam Plant nuclear matrix protein 1 (NMP1) 7 323 IPR010604 GO:0051011
Sto13g2733 426 Hamap 30S ribosomal protein S27e [rps27e]. 364 424 IPR000592 GO:0003735|GO:0005840|GO:0006412
Sto13g2733 426 Gene3D - 345 425 IPR023407 -
Sto13g2733 426 SUPERFAMILY Zn-binding ribosomal proteins 370 424 IPR011332 GO:0006412
Sto13g2733 426 PANTHER HAUS AUGMIN-LIKE COMPLEX SUBUNIT 7 7 326 IPR029711 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2733 Sto-Chr13 33032365 33039717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2733 342 426 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 92.941 2.90e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2733 K16590 - egr:104444531 579.711