Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2729 ATGTGGGGAAGCATTTTGTCGAGGATATATGTGAAGAATCTGCCAAAATATGTGGCAGAAGATCGACTACGGGAATTCTTTTCGCAGAAAGGAGAACTAACGGATTGCTTATTGATTTTCCTGTTACATTTGGTAATTTTTCGTACCAGAGATGGTAAGAGCCGGCAATTTGGTTTTATTGGGTTTCACACCGAGCACGAAGCTGAGGAAGCTCTAAAATATTTCAACAGATCCTACCTTGACACCCATAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGAGATCCAAATATTCCGCCTTCATGGAGTCGATATTCAcgaaagaaagatgaaaaagTGGCCCAAGATGGGAAGAAACATGCTGAAAATGGAAGTGTTGCTAAGAAAAAAGGGGTTGGAAAGAATTTGAAGGAGAGCATTGATATTGATGACCCACAGCTTCAAGAATTTCTTCAGGTCACGGAACCTCGGTCTAAGTCAAAAATGTGGGCAAATGATACATTAGCAGTATTGGATAATACAAGTGTGAAGCAAAAAATAGCAGAGAACAAAAGCAAGGACATATCAGTTCCTGTGGATGCTGAAGTAGTTCGAAGTGGCTCATTAGATGATGGTTTCTCGAATAATCATATATCCGATAAAACAAATAATCTTGTCTATGATGATGTCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGAAGTGGTCTGACTCTGAAAGTAGTGATGACGATGAAGATGACAACAATGCCTCTAgcagtgatgatgatgataaagaaaATGATAGTCATGGCAGTGAAGGTGAAGAAGATTGcgacaataaatatttaaaaagagcTGGAAGAAGTGGTGCTCAGAACTTAGATCCATCGGACCAAAAAGATATCAGTGGTGAGGCTGATGATCATGAAAAGGCTGAAGTGGAAGACCTTTCCAATCGTTCTGGTAATAATGTACCTGAGCAAGGGGGCTCTTTGTCATGTCTGGAAGATGAAAAAGGAGTTTTGGAGTCCTGTCGACTATTTGTTCGTAATCTGCCATATACAGCCACTGAGGAGGAACTGGAAGAACACTTCAGCAAGATTGGCAGTGTATCACAGGTTCATTTAGTTGTTGATAAAGATACAAAGCGATCCAAGGGAATAGCATATATTCTTTACACACTTCCGGAATTTGCTGCCAGGGCACTTGAAGAGCTAGATAATTCAATCTTTCAAGGAAGATTGTTGCATGTTTTGCCAGCCATGCAAAGATCTTCAGACAACAAGGAGAACCATTCTTCCATGGACCAGAACTCAAAAAGTCTGAAGCAAAAGAGGGAGGAAGAGAGAAAAGCAGCTGAAGCTAGTGGGGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTTGAAAATATTGCCCGGAAATATGGTGTAAGCAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCCGTACGCATTGCTCTGGGTGAAACTCAAGTGATTGCTGAGACAAAAAAGGCCCTTACAAATGCCGGAGTGAATGTGGAGTCACTGGAGGAATTTGCCAATGGTAATAAAGATGGTGTGAAAAGAAGCAAGCATGTACTATTAGTGAAGAACTTGCCATATGGTTCATCAGAAAATGAACTAGCGAAGATGTTTGGGAAATTTGGTAGTTTGGACAAGATAATTCTTCCTCCAACAAAGACATTGGCCTTGGTTGTTTACCTTGAACCAGCTGAAGCTCGGGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTcaaAGATGCTCCGTTGTACTTGGAATGGGCTCCTTCCAATATTCTTATCCATAGTTCAACATCTAAGAATAATGAAAAGAGTGGTCCAATTGGTGAAAAAGATGTTAAGCGGCAGATGTTGGAGCAACAAGTGGAAGGAATATCATATATGGACATTGATCATGACAGAGTAGAGGCTCGATCTCTTTATGTCAAGAACCTCAACTTTAAGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAATTTTGAGTGCCAAGGTGAATAAGCATATGAGAAACGGAAAACATGTTTCTAGGGGATTTGGATTCATTGAATTTGACTCTTTAGAGACTGCTACAAATGCTTGCAGAGACTTACAGggGACTGTTCTGGATGGCCATGCACTTATTTTACAACTTCACAATGCCAAGAAGGACGGGCAAGTACCAAAAACAGTTGAGAAGGACAAAAGTTCTACAAAATTACTTGTACGAAATGTAGCTTTTGAGGCAACAAAGAAGGATTTGAGACAGTTGTTTAGCCCATTTGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAATTTGGAAGTCATAGAGGGTTTGCTTTTGTTGAGTACGTTACAAAGCAGGAGGCACAAAATGCACTTAAAGCACTATCAAGCACCCATCTGTATGGCAGGCATCTGGTGATAGAGAGAGCAAAGGAAGGTGAGAGTTTGGAAGAACTACGAGCTCGGACAGCTGATCAATTTAGCGATGAGCAAAATGGATTTCAAAATCCAACCAAGTTATCCAAGAAAAGGAAGCACTTGGCCATCTTGGATGAGGGAAAGATGAAGTTTCAAAGAACGGCTGATTAG 2649 0.3983 MWGSILSRIYVKNLPKYVAEDRLREFFSQKGELTDCLLIFLLHLVIFRTRDGKSRQFGFIGFHTEHEAEEALKYFNRSYLDTHRITCEVARKVGDPNIPPSWSRYSRKKDEKVAQDGKKHAENGSVAKKKGVGKNLKESIDIDDPQLQEFLQVTEPRSKSKMWANDTLAVLDNTSVKQKIAENKSKDISVPVDAEVVRSGSLDDGFSNNHISDKTNNLVYDDVISDMEYFKSRVTKKWSDSESSDDDEDDNNASSSDDDDKENDSHGSEGEEDCDNKYLKRAGRSGAQNLDPSDQKDISGEADDHEKAEVEDLSNRSGNNVPEQGGSLSCLEDEKGVLESCRLFVRNLPYTATEEELEEHFSKIGSVSQVHLVVDKDTKRSKGIAYILYTLPEFAARALEELDNSIFQGRLLHVLPAMQRSSDNKENHSSMDQNSKSLKQKREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALTNAGVNVESLEEFANGNKDGVKRSKHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNILIHSSTSKNNEKSGPIGEKDVKRQMLEQQVEGISYMDIDHDRVEARSLYVKNLNFKTSDESLKNHFSEHVKEGRILSAKVNKHMRNGKHVSRGFGFIEFDSLETATNACRDLQGTVLDGHALILQLHNAKKDGQVPKTVEKDKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTKQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTADQFSDEQNGFQNPTKLSKKRKHLAILDEGKMKFQRTAD 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2729 882 PANTHER RNA-BINDING PROTEIN 19-RELATED 7 859 - -
Sto13g2729 882 MobiDBLite consensus disorder prediction 104 132 - -
Sto13g2729 882 CDD RRM5_RBM19_like 656 736 IPR034423 -
Sto13g2729 882 Gene3D - 230 430 IPR012677 -
Sto13g2729 882 SUPERFAMILY RNA-binding domain, RBD 8 103 IPR035979 GO:0003676
Sto13g2729 882 SUPERFAMILY RNA-binding domain, RBD 742 835 IPR035979 GO:0003676
Sto13g2729 882 MobiDBLite consensus disorder prediction 296 313 - -
Sto13g2729 882 CDD RRM1_MRD1 7 90 - -
Sto13g2729 882 SUPERFAMILY RNA-binding domain, RBD 645 743 IPR035979 GO:0003676
Sto13g2729 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 92 IPR000504 GO:0003723
Sto13g2729 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 85 IPR000504 GO:0003723
Sto13g2729 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 658 732 IPR000504 GO:0003723
Sto13g2729 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 758 825 IPR000504 GO:0003723
Sto13g2729 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 413 IPR000504 GO:0003723
Sto13g2729 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 538 600 IPR000504 GO:0003723
Sto13g2729 882 CDD RRM3_RBM19_RRM2_MRD1 342 415 - -
Sto13g2729 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 341 419 IPR000504 GO:0003723
Sto13g2729 882 SMART rrm1_1 657 735 IPR000504 GO:0003723
Sto13g2729 882 SMART rrm1_1 537 604 IPR000504 GO:0003723
Sto13g2729 882 SMART rrm1_1 342 415 IPR000504 GO:0003723
Sto13g2729 882 SMART rrm1_1 8 88 IPR000504 GO:0003723
Sto13g2729 882 SMART rrm1_1 757 828 IPR000504 GO:0003723
Sto13g2729 882 MobiDBLite consensus disorder prediction 425 452 - -
Sto13g2729 882 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 859 - -
Sto13g2729 882 CDD RRM6_RBM19_RRM5_MRD1 756 830 - -
Sto13g2729 882 SUPERFAMILY RNA-binding domain, RBD 337 425 IPR035979 GO:0003676
Sto13g2729 882 SMART rrm2_1 657 735 IPR003954 GO:0003676
Sto13g2729 882 SMART rrm2_1 8 88 IPR003954 GO:0003676
Sto13g2729 882 SMART rrm2_1 342 415 IPR003954 GO:0003676
Sto13g2729 882 MobiDBLite consensus disorder prediction 235 328 - -
Sto13g2729 882 Gene3D - 528 630 IPR012677 -
Sto13g2729 882 Gene3D - 748 857 IPR012677 -
Sto13g2729 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 536 608 IPR000504 GO:0003723
Sto13g2729 882 MobiDBLite consensus disorder prediction 421 452 - -
Sto13g2729 882 CDD RRM4_RBM19_RRM3_MRD1 536 607 - -
Sto13g2729 882 MobiDBLite consensus disorder prediction 243 257 - -
Sto13g2729 882 SUPERFAMILY RNA-binding domain, RBD 533 619 IPR035979 GO:0003676
Sto13g2729 882 Gene3D - 6 136 IPR012677 -
Sto13g2729 882 Gene3D - 631 747 IPR012677 -
Sto13g2729 882 MobiDBLite consensus disorder prediction 100 132 - -
Sto13g2729 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 656 739 IPR000504 GO:0003723
Sto13g2729 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 756 832 IPR000504 GO:0003723
Sto13g2729 882 MobiDBLite consensus disorder prediction 258 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2729 Sto-Chr13 33000850 33011106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2729 7 92 Eukaryotic Initiation Factors Gene Family AT1G49760 33.721 2.75e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2729 K14787 - gmx:100796243 1112.44