Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2717 ATGGGTGCTCCTAAGCAGAAATGGACGCCAGAGGAAGAAGCAGCACTCAAAGCTGGAGTTGTTAAGCATGGGGTTGGGAAATGGCGCACAATCCTTAAGGATCCAGAGTTTAGTAGTGTCTTGTATCTGCGGTCTAATGTAGATCTCAAGGATAAATGGAGAAATCTAAGTGTGATGGCAAACGGATGGAGCTccagagacaagtctagattagCTGTTAAAAGGGTGCAGCAAGTCCCAAAACAGGACGAAAACCCTATGACTGCCACTTCTGTTGTTCCAAGTGACGAAGAAATTATGGATGTCAAGGCTCCTCAAGTTTCTAGGGATATTATGCTGCACGTTCCAGGTCCAAAGAGGTCTATTGTAAGATTGGATAACCTTATATTGGAAGCAATAAGTAGCTTGAAGGAGTCTGGTGGTTCCAACAAGACAAATATTTCAGCTTACATAGAGGACCAGTACTGGGCACCTCCAGACTTCAGAAGGTTGTTATCCGCTAAACTGAAATCTTTGACAGCAAGTGGAAAATTGATCAAGGTAAAACGCAAATATAGGATTCCGCCCACCCCTGCATATTCTGACAGAAGACGAAACTCATCCTTGTTATTGCCGGATGCAAGGCAGAGGTTCTCTATGAAGATTGATAAAGATGAGGCCAATGTCATTACTAAGTCTCAGATAGATTTAGAATTAGCAAAGATAAGGTCTATGACAGCACAAGAGGCGGCTGCTGTTGCTGCTAGAGCagttgcagaagcagaagctgCCATAGCAGAAGCTGAAGAAGCGGCAAGGGAGGCAGAGGCTGCAGAAGCTGATGCCGAGGCAGCACAAGCATTTGCAGAAGCTGCATTAAAGACACTTAATGGAAGAAACACCCCGAAATTGCGACGGAAATTTTCGCTGCACCATACGTTCAGACTTCAGACATTTCAAACAAAACCTGTTGTTGCGTGTGTTAGATGGCAGTGGCCTTCCTTGGCTTTTCTTGGAATCAACTACTCATGCTACGCTTCTCTTGTAAATGCCTGTATGCATGATGACCAAAAAACTGGCAACAAAGTGCATGCAGCTTGTATCAGAAGTCCAAGGGGAAGTCCTGAAAAGTCACTAGCTGTTACCTTGATGAAAGATACTAGTGCAATGCCGAGGTATCCGCTAACTATGAAAGCAAGGGCCACAGCAGACATGAGAAATGCCATTACAGATCCCTCACATCCTGGTGGACAAAGCTGTGCTATTAAGACCATGAATGGCAATATCTTGAAGAAAAACAGAACCTCTAAGAACCCTGAGAAAATCACAACATAG 1314 0.4292 MGAPKQKWTPEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVKRVQQVPKQDENPMTATSVVPSDEEIMDVKAPQVSRDIMLHVPGPKRSIVRLDNLILEAISSLKESGGSNKTNISAYIEDQYWAPPDFRRLLSAKLKSLTASGKLIKVKRKYRIPPTPAYSDRRRNSSLLLPDARQRFSMKIDKDEANVITKSQIDLELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTLNGRNTPKLRRKFSLHHTFRLQTFQTKPVVACVRWQWPSLAFLGINYSCYASLVNACMHDDQKTGNKVHAACIRSPRGSPEKSLAVTLMKDTSAMPRYPLTMKARATADMRNAITDPSHPGGQSCAIKTMNGNILKKNRTSKNPEKITT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2717 437 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto13g2717 437 SMART sant 4 59 IPR001005 -
Sto13g2717 437 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sto13g2717 437 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sto13g2717 437 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Sto13g2717 437 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Sto13g2717 437 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto13g2717 437 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto13g2717 437 SUPERFAMILY "Winged helix" DNA-binding domain 119 198 IPR036390 -
Sto13g2717 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sto13g2717 437 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 297 - -
Sto13g2717 437 Gene3D - 2 59 - -
Sto13g2717 437 Gene3D - 119 197 IPR036388 -
Sto13g2717 437 CDD SANT_TRF 6 56 - -
Sto13g2717 437 Coils Coil 244 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2717 Sto-Chr13 32928185 32937531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2717 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 66.667 8.36e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto13g2717 Linker_histone 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2717 K09422 - gmx:100780698 378.252