Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2706 ATGAGACTCTCTTCATCTGGTTTTAGCCCTCCGCCCCAGGAAGCTACGGATTTTCTGTTCCATATATATGATAATGAGATGGATTTTGTAGGAGAAAAGCGAGTCCTGGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTTTCTCTACCAGCAATTGGAAGTCGTGTTGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGCATCAACCAACAAGGAAGTGGATGCCCATATCCCTAATTACCCTAGCTTACCTCCGCAGCTTATTTGTCAGCTTCATAATGTGACTATGCATGCGGATGCTGAGACAGATGAAGTATATGCACAGATGACCTTGCAAGCTCTGAATCCTCAAGAGCAGAAAGAGGCTTATCTGCCAGCAGACTTGGGCACTCCCAGTAAACAGCCGACGAATTACTTTTGCAAAACTTTGACGGCCAGTGACACAAGCACACATGGGGGATTCTCTGTTCCACGACGAGCGGCTGAGAAAGTGTTTCCTCCACTGGACTTCTCTCAACAACCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTTAGACATATCTTCCGGGGTCAACCCAAAAGGCATCTACTAACAACGGGGTGGAGTGTCTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTTCTATTTATCTGGAATGAAAAGAATCAATTGCTCCTTGGTATCCGGCGAGCAAATCGACCACAAACTGTGATGCCTTCCTCAGTGTTATCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCATCCGAATTTGTCATACCCTTAGCCAAGTATGTTAAAGCAGTGTATCATACTCGAGTCTCAGTTGGCATGCGCTTCAGGATGCTGTTTGAAACTGAGGAATCAAGCGTGCGGCGATATATGGGCACAATAACTGGTATTAGTGACTTGGATCCTGTTCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGATAGGCAACCTAGAGTGTCCCTGTGGGAAATTGAGCCATTAACAACATTTCCGATGTATCCATCACCATTCCCTCTGAGGCTTAAACGGCCATGGCCTCCTGGGCTGCCTTCTTTCCAGGGGATGAAGGATGACAATTTAGGCATAAATAATCAGCTATTGTGGCTTCGAGACACTACTGACAGAGGGATTCAGTCTCTCAATTTccaggggtttggggttagtccCTGGTTGCAGCCAAGGCTTGATTCCACCATGTTGAATTCACCAACCGACATGTACCAAGCTATGGCTACTGCTGCAGTTCAGGATATGAGGACATTGGATCCTTCTAAACAACATCCTGCATCCTTTCTTCAATTTCAGCAACCCCAAAACTTTCCCAACAGGACTGCCGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCACAACCACAGCAAGCTTTTCAAAGTAATCAAGAGAATCAGCATCCGTCTCAATCGCAACTTCAGCAGCAGCAGCACCAAGTGGATGATCATCAGCATATTTCAAGTGCTTCTGCTATGTCTCAGTTTGTTTCTACAACTCAACCTCATTCACCACCCATGCAAGCTATATCTTCACTGTGCCAACAGCAAAATTTTTCTGATTCAAATGTGAATCCTGTGACTGCTACTGCTGTCTCTCCCTTGCACAGTATCTTGGGTTCATTTTCCCAGGATGAATCGTCCCACCTTCTCAACCTACCAAAAACTAGCTCTTGGATACCTGTTCAAACATCTACTGCCTGGCCCTCCAAGCGTGTTGCGGTGGATCCTCTCCTTTCATCTGGGGCTTCTCAATGTGTTCTGCCTCAGTTTGAGCAGTTAGGGCAGCCACAAAGTACTATGTCTCAGAATATTGTTACTTTGCCACCCTTTCCTGGGAGGGAGTGCTCAATAGACCAAGGGAGCACCGATCCACATAACAATCTTTTATTTGGTGTTAATATAGAGCCTTCATCTCTTATAGTGCAGAATGGGATGTCAAACCTTAAGGGGGTCAGCAGCAATAGTGACTCCACAATTGTGCCGTTCCAATCATCTAATTACATGAATAATACTGGAACTGATTCTTCATTAAATCCTGGAATGACACATAGCATTGTTGAGCCGAGCTTCCTTGAGACTCCAGATAATGGGGGTCAAGGAAACCCAGCAAACAAAACATTTGTGAAAGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTAGATATCACTAAATTCAGCAGCTACCACGAGCTGCGAAGTGAACTTGCTCGTATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCAGAATTCGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTGAAGAAGTGCAGCAAATGGGCAACAACGGGCTCGAGCTTCTGAACTCAGTCCCAATTCAGAGGCTCTCTAACAGCATCTGTGATGACTATGTGAGCCGTCAGGACCCAAGAAATTTAAGCACTGGGATAACGACAGTTGGGTCTTTAAACTACTGA 2670 0.4554 MRLSSSGFSPPPQEATDFLFHIYDNEMDFVGEKRVLDSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQALNPQEQKEAYLPADLGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFQGMKDDNLGINNQLLWLRDTTDRGIQSLNFQGFGVSPWLQPRLDSTMLNSPTDMYQAMATAAVQDMRTLDPSKQHPASFLQFQQPQNFPNRTAALMQAQMLQQSQPQQAFQSNQENQHPSQSQLQQQQHQVDDHQHISSASAMSQFVSTTQPHSPPMQAISSLCQQQNFSDSNVNPVTATAVSPLHSILGSFSQDESSHLLNLPKTSSWIPVQTSTAWPSKRVAVDPLLSSGASQCVLPQFEQLGQPQSTMSQNIVTLPPFPGRECSIDQGSTDPHNNLLFGVNIEPSSLIVQNGMSNLKGVSSNSDSTIVPFQSSNYMNNTGTDSSLNPGMTHSIVEPSFLETPDNGGQGNPANKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNNGLELLNSVPIQRLSNSICDDYVSRQDPRNLSTGITTVGSLNY 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2706 889 MobiDBLite consensus disorder prediction 498 536 - -
Sto13g2706 889 Pfam AUX/IAA family 750 841 IPR033389 -
Sto13g2706 889 PANTHER AUXIN RESPONSE FACTOR 512 869 - -
Sto13g2706 889 PANTHER AUXIN RESPONSE FACTOR 29 511 - -
Sto13g2706 889 SUPERFAMILY DNA-binding pseudobarrel domain 128 272 IPR015300 -
Sto13g2706 889 Gene3D - 307 379 - -
Sto13g2706 889 ProSiteProfiles PB1 domain profile. 756 840 IPR000270 GO:0005515
Sto13g2706 889 Pfam B3 DNA binding domain 143 244 IPR003340 GO:0003677
Sto13g2706 889 SMART B3_2 143 245 IPR003340 GO:0003677
Sto13g2706 889 Pfam Auxin response factor 269 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto13g2706 889 Gene3D - 141 244 IPR015300 -
Sto13g2706 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 511 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto13g2706 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 512 869 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto13g2706 889 CDD B3_DNA 142 243 IPR003340 GO:0003677
Sto13g2706 889 Gene3D - 752 845 - -
Sto13g2706 889 ProSiteProfiles B3 DNA-binding domain profile. 143 245 IPR003340 GO:0003677
Sto13g2706 889 SUPERFAMILY CAD & PB1 domains 753 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2706 Sto-Chr13 32842781 32848960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2706 756 848 B3 DNA Binding Superfamily AT1G19220 62.366 2.05e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto13g2706 AUX_IAA 3.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2706 - - gmx:100798719 1453.34