Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2652 ATGGAACGTCCTGCCTTTCATGGCTACCGCAAGCTCCCCAACACCCCCTCCCCagGAGATGGAACCGGAGAGAATGTGAATAACAAGATGGTGGGAACAGGAGGGGATCCGGGGGCGGATAACGAGTGCACGGTGAGAGAGCAAGACAGGTTCATGCCGATCGCGAACGTGATAAGGATAATGCGGAAGATCCTACCGCCACACGCGAAGATATCGGACGACGCTAAGGAAACGATCCAGGAGTGCGTGTCGGAGTACATAAGCTTCATAACCGGAGAGGCCAACGAGCGGTGCCAGAGGGAGCAGCGCAAGACCATCACGGCCGAGGACGTCCTGTGGGCCATGAGCAAGCTCGGGTTCGACGACTACATCGAGCCACTCACCATTTACCTGCACCGCTACCGCGAGATGGAAGGGGATAGAGCCTCCATAAGAGGGGACCCCGTACTGCCCAAGCGAACCCCGCTCGACTCCTTCGTCGCGCCGCCATTTCATCACCACATGAATGGCTACTTCATGGCGGGAGGCTACATGAGGGACCATCCACTCTCACatactaataataatcataacaaTGCTTCACCAGCAGGAGCAGGATCGGGGTCACAGGGTGGACCTAATGCCGAACCAAATGGACATCAgtataaataa 651 0.5484 MERPAFHGYRKLPNTPSPGDGTGENVNNKMVGTGGDPGADNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTIYLHRYREMEGDRASIRGDPVLPKRTPLDSFVAPPFHHHMNGYFMAGGYMRDHPLSHTNNNHNNASPAGAGSGSQGGPNAEPNGHQYK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2652 216 MobiDBLite consensus disorder prediction 182 216 - -
Sto13g2652 216 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 6 152 - -
Sto13g2652 216 MobiDBLite consensus disorder prediction 1 41 - -
Sto13g2652 216 SUPERFAMILY Histone-fold 48 145 IPR009072 GO:0046982
Sto13g2652 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Sto13g2652 216 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Sto13g2652 216 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Sto13g2652 216 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Sto13g2652 216 MobiDBLite consensus disorder prediction 182 209 - -
Sto13g2652 216 Gene3D Histone, subunit A 40 148 IPR009072 GO:0046982
Sto13g2652 216 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto13g2652 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2652 Sto-Chr13 32317947 32319457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2652 1 141 CCAAT-HAP3 Transcription Factor Family AT5G47670 72.903 7.49e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto13g2652 CBFD_NFYB_HMF 6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2652 K08065 - gmx:100800011 258.84