Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2644 ATGGACCTCTTCACCGGCGACGACTTCCCTGACCACGTGACCCCATTTCCCGACACCAGTGACTTCCTTTGCGCTCAGCAAATAActctgattcacccatcggaggtCATCACCGACCACCATCGGCCGCCGCCTCCGCAGAAACTCCGCCCCATCAGGTGTAACGGCAGGTCTTCCCCGGTGGGTGGGCTTTCGGAAGATTCTCGACTTGCCGTTACATCCACTGATGTGGGTTTCCTCAGTAATCAGCTATGTGTCGATAATGGAGAGCCAAGTTACAGCCTTCAGTCTTTGGGGCAGCAAGTTGAAGACAGCGAGGCGATAGGAAATGGGCGTCTCCGAATGGAGAAGCCGGTGGGGGATGGGTCAGGTCATAATTGGGACCCGAATAATGAGGAAGGCCCGATGGAGCAGGAATCTGGTTTTGGTGCATGGATGGATGCAATTAAGCATCCCTCTTGTCAGAGAGAAGCACTGACATCCATGAGGCAGAGATTGATGGATAGCTTAGccatatttaaacttttttatgttcTAATGCTCATTATGATAAAGTTAATTGGATCCATCAACGTCTTGTTGATATACAAAATGTTTCAGCATGTGGGTTGGGGAATGGAATGCTCTTCTTCGGATGATGATGAGAATTCATTTGGAAGTACAAAAGAACCTGGCATTggaaagagaaggaagaagacaaTGAAAAAGCTTGAAGTTTTCTTGGAACATTTGGTGAGGAAAGTGATGGAAAAACAAGAGGAAATGCATAAACAGTTGATGGATTTGAtagaaaagaaggaaagggaAAGAGTGATGAGAGAAGAAGCTTGGAGGCAGAAGGAGATGGAAAGAATTAAAAGAGAAGAGGAAGCCAGACTCCAAGAAAAATCTCGGAATTTAGCCCTCATATCTTTCATTCAGAATTTACTGGGCCATGAAATTGAAATCCCCCAACCAGTAAGCAGCTTAAGAGCAGATGATGAAGGTGAGGCAAATATCCAACAAGATTTGAAGATTGATTTGAGCAGCAATAATAATAGATGGCCAGAAGCTGAAGTACAAGCACTCATAACCCTAAGAACTTCTTTAGAACATAAGTTTCAACTTATGGGACCGAAAGGGTCTATATGGGAGGAGATATCTGAAGCAATGCAGAATATGGGGTACAACCGTTCTGCAAAGAAGTGTAAGGAGAAGTGGGAGAACATCAACAAGTACTACAAAAGAACAATAGGAAGCGGGAAGAAGCGGCGCCTGAACAGTAAAACTTGCCCTTACTTTGATGAATTGGACATACTATACAGAAATGGACTGTTGAATGTTGGAAATGGGTTGAGCAGTACCAACAAGGAGGACCAACTTAAAGTGATGGATGATTCACTATATGTTGTATACACTTTCTGGGCTGGCTGTGTAGGAGCCATGAATTTATCTGGCTTTCCTCCAACTTGA 1452 0.4208 MDLFTGDDFPDHVTPFPDTSDFLCAQQITLIHPSEVITDHHRPPPPQKLRPIRCNGRSSPVGGLSEDSRLAVTSTDVGFLSNQLCVDNGEPSYSLQSLGQQVEDSEAIGNGRLRMEKPVGDGSGHNWDPNNEEGPMEQESGFGAWMDAIKHPSCQREALTSMRQRLMDSLAIFKLFYVLMLIMIKLIGSINVLLIYKMFQHVGWGMECSSSDDDENSFGSTKEPGIGKRRKKTMKKLEVFLEHLVRKVMEKQEEMHKQLMDLIEKKERERVMREEAWRQKEMERIKREEEARLQEKSRNLALISFIQNLLGHEIEIPQPVSSLRADDEGEANIQQDLKIDLSSNNNRWPEAEVQALITLRTSLEHKFQLMGPKGSIWEEISEAMQNMGYNRSAKKCKEKWENINKYYKRTIGSGKKRRLNSKTCPYFDELDILYRNGLLNVGNGLSSTNKEDQLKVMDDSLYVVYTFWAGCVGAMNLSGFPPT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2644 483 SUPERFAMILY Homeodomain-like 344 406 IPR009057 -
Sto13g2644 483 MobiDBLite consensus disorder prediction 37 66 - -
Sto13g2644 483 Pfam Myb/SANT-like DNA-binding domain 346 431 IPR044822 -
Sto13g2644 483 Coils Coil 249 269 - -
Sto13g2644 483 Gene3D - 348 409 - -
Sto13g2644 483 PANTHER - 9 452 - -
Sto13g2644 483 Coils Coil 279 299 - -
Sto13g2644 483 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 9 452 - -
Sto13g2644 483 ProSiteProfiles Myb-like domain profile. 340 404 IPR001005 -
Sto13g2644 483 CDD GT1 346 410 - -
Sto13g2644 483 SMART sant 344 406 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2644 Sto-Chr13 32281321 32283873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2644 226 436 Trihelix Transcription Factor Family AT5G47660 48.230 5.84e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto13g2644 Myb_DNA-bind_4 5.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2644 - - gmx:100820302 346.28