Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2632 ATGTCAGGGAAATTTTTAGATTCTCTAATTGCTAGAGGGAATTATTTTCCTACCGACGAGGATTTGTCCAGGAGAAAAAAGAATGCTGCTAGTGGAGAAACTTTAGAATCGGGAACTGCAGGTCAAGGAACAAGTGAAGGGGAAAGGGCTTTGTACCATTGCAATTATTGCAACAAAGATATTACAGGAAAAGTCCGTATTAAGTGTGCCATGTGTCCCGATTTTGACCTATGCATAGAGTGTTTTTCTGTTGGAGCTGAGGTGACACCACATAAAAGCAATCACCCTTACAGGGTTATGGATAATTTGTGTTTCCCTCTTATTTGCCCTGACTGGAATGCAGATGATGAAATTCTACTTCTAGAGGGAATTGAAATGTATGGCATGGGGAACTGGGCGGAGGTTGCTGAGCATGTTGGGACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGTGTACTTGGACTCTCCATTCTTTCCTCTTCCGGACATGTCTCACGTTGTTGGAAAAAACAGAAAGGAGCTTCTTGCTATGGCTAAAGGGCAGGGTGAAGACAAAAAAGTTGTGAATGGAACAGGGATTTCTGTTGGAGATTTTAGTTTAAAGGAAGAATCGCCATTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGCTGGTCCCACTGGCCGTTTACTGTCCGGCTTAAATTCAGATGTAGATTCTGGCACCTCTGGTATCTCGCATACTGCTGCACCAGCTAATCAGAGAGCTTCCAATGCAACATGGGGCAAAGATGGTCCTGGATTAAGTAAAATGGAAGGTGTTCGTGTTTTCTTAACTGCTGAAACTTCTGATGACCGGAATTTTGGAGGAAAAAAGTCAAGTTCCTCAAACAATGAAGGTCCTTCTCTATTACAGTTGAGTGGTTATAACCCGAAAAGACAGGAATTTGATCCTGaatatgataatgatgctgaacAACTACTTGCCGAAATGGAATTTAAGGACACTGACTCTGAGGTTGAACGAGAACTGATGCTTCGTGTGTTGCGTATCTTTAACAAAAGGCTTGATGAAAGAAAGCGTAGAAAAGATTTTATACTTGAAAGAAATTTGTTATATCCAAGTGCTTTTGAGAAGAATTTAACAGCCGAAGAGACAGCACTTTGTCGACAATATGAATATTTCATGCGCTTTCATTCCAAGGAAGATCATCAGGAGTTGCTTCAAACAATTATAAATGAACACAGAATTCGAAAAAGAATTCAAGAGCTTAAGGAAGGCCGTGCTGCTGGGTGCCGTACATCAGCTGAAGCAGATAGGTATCTAGAACAGAAACGCAGAAGGCAAGCCGAAGAAAATGCACGTAGGGCAAAAGAAAGTGCTCAGGTTGGCCAAAGCAATCAGGGGGTTCCGAATGTTTTCATGTCTTCAGACTCAACTGCAAGATCTGCTGCTTCAAGTTCTGTTAATGAAGTGGATGTTACAGGGGCAGATTTGCTTTCTGAAAATGAGAAACGTTTATGCTGCGAGCTAAGGTTGCCTCCAGCCACATATCTGAGGATGCAAGAGGTTTTGACGCTACAAGTATTTAGTGGCAATATCTCTACAAAATCGGATGCCCACCACCTATTCAGAATGGAAACTAGCAAAATCGACAGAGTCTATGATATGCTTGTGAAGAAGGGAATTGCTCCTCCTTGTCATTGA 1701 0.4121 MSGKFLDSLIARGNYFPTDEDLSRRKKNAASGETLESGTAGQGTSEGERALYHCNYCNKDITGKVRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLCFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYRNVYLDSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKVVNGTGISVGDFSLKEESPFSPSRVKVEDSHKAGPTGRLLSGLNSDVDSGTSGISHTAAPANQRASNATWGKDGPGLSKMEGVRVFLTAETSDDRNFGGKKSSSSNNEGPSLLQLSGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDSEVERELMLRVLRIFNKRLDERKRRKDFILERNLLYPSAFEKNLTAEETALCRQYEYFMRFHSKEDHQELLQTIINEHRIRKRIQELKEGRAAGCRTSAEADRYLEQKRRRQAEENARRAKESAQVGQSNQGVPNVFMSSDSTARSAASSSVNEVDVTGADLLSENEKRLCCELRLPPATYLRMQEVLTLQVFSGNISTKSDAHHLFRMETSKIDRVYDMLVKKGIAPPCH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2632 566 Gene3D - 106 157 - -
Sto13g2632 566 Gene3D - 44 100 IPR043145 -
Sto13g2632 566 ProSiteProfiles SWIRM domain profile. 478 566 IPR007526 GO:0005515
Sto13g2632 566 MobiDBLite consensus disorder prediction 202 265 - -
Sto13g2632 566 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 12 564 IPR034318 GO:0003713|GO:0006357|GO:0035065
Sto13g2632 566 Pfam Myb-like DNA-binding domain 111 154 IPR001005 -
Sto13g2632 566 ProSiteProfiles Myb-like domain profile. 112 155 IPR001005 -
Sto13g2632 566 MobiDBLite consensus disorder prediction 282 312 - -
Sto13g2632 566 SMART sant 108 157 IPR001005 -
Sto13g2632 566 CDD ZZ_ADA2 52 100 IPR041983 -
Sto13g2632 566 SUPERFAMILY RING/U-box 52 115 - -
Sto13g2632 566 MobiDBLite consensus disorder prediction 438 456 - -
Sto13g2632 566 MobiDBLite consensus disorder prediction 287 307 - -
Sto13g2632 566 CDD SANT 112 154 IPR001005 -
Sto13g2632 566 ProSitePatterns Zinc finger ZZ-type signature. 54 81 IPR000433 GO:0008270
Sto13g2632 566 MobiDBLite consensus disorder prediction 438 486 - -
Sto13g2632 566 SUPERFAMILY Homeodomain-like 488 561 IPR009057 -
Sto13g2632 566 MobiDBLite consensus disorder prediction 231 258 - -
Sto13g2632 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 159 IPR017930 -
Sto13g2632 566 SUPERFAMILY Homeodomain-like 107 158 IPR009057 -
Sto13g2632 566 MobiDBLite consensus disorder prediction 19 45 - -
Sto13g2632 566 SMART zz_5 48 93 IPR000433 GO:0008270
Sto13g2632 566 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 12 564 - -
Sto13g2632 566 ProSiteProfiles SANT domain profile. 107 159 IPR017884 -
Sto13g2632 566 MobiDBLite consensus disorder prediction 457 486 - -
Sto13g2632 566 ProSiteProfiles Zinc finger ZZ-type profile. 49 105 IPR000433 GO:0008270
Sto13g2632 566 PIRSF Txn_adaptor_ADA2 39 564 IPR016827 GO:0003713|GO:0006357|GO:0035065
Sto13g2632 566 Pfam Zinc finger, ZZ type 52 92 IPR000433 GO:0008270
Sto13g2632 566 Gene3D - 477 562 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2632 Sto-Chr13 32209738 32214483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2632 17 562 EF-hand Containing Proteins AT3G07740 44.599 4.58e-153 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto13g2632 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2632 K11314 - gmx:100811887 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2632 13 32209738 32214483 Sto13g2632 13 32209738 32214483 ECH