Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2611 ATGGCTGAAGGTGCAGTCTCACAAGACAGCTTTCCCCAAACTGTGGCGGCACCACTGCCGCCATCGCCACCGCTTATGGCGGCCGGAAACGGCTTAGAAGAAAATCTCAGGCATTGTGTGGAGGAGCTCTCTTATCATCACCACCAGCACAATCCACCTCGCCCGGACGATGCCTCCGCCTTTGCCACATCGGTGGAAATCGCGCATCCACAGCATCCAGTTTTGAACATGGGAAACTCATACAACAATGAGACTGTGGGTACGCATTTGGTGCAACATGTCATTGACGTGCTCTCCTATGAGCACTCCTCATGGGACCCTAGTGTTCAGGAATTTCAGGATTTGGTTTATGCTAATCATTACCATGATCAACAGCAGCAACAATTTCAGCAAATGGAAGCACAGAGCTACAACAATTCTTCTTCCATACTTGGCCCTTCACCGGATCTCCTCAACCTCAACCTTCTCCACTTGCCTAGATCCTCCGCTAATTCCTCTCTGCTCGCAAACTCAACACAGAAGATTCCCGCTAATTTTCAGAATTCCATAGGGTTTCTTGGTGAACTTTCAATGGGAGTGGATACCGCAAGCGCTAGCTCTGTGATGTATGATCCTCTGTTTCATTTCAATCTGCCTCCACAGCCTCCGGCGCCGCTGAAAGAGCTGTTTCAGTCTCCGCCACGTGGCTACAGCTTGCCACCTAGCTCCAGAAATGGCGGTTCCCTTTTTGGTGGAGGGGATGACACAGAAGGGAATGGAATTGTGTATCAAGATGGAGATGGGAGTCAGCTTGATAACAACGGAGTTCTGGAATTCAACACAGGAACAGCTTGCGTTGccaaaggaagagaaggaaaaggCACAAAACATGTTGCTACTGAGAAACAGAGAAGAGAGCAATTGAACGGAAAATACCATGTGTTGAGGAgtctaatcccaaaccccaccAAGGCGGATAGAGCATCTGTGGTCGGGGATGCCATTGGGTACATAAGAGAGCTAATTAGAACAGTCAATGAACTCAAATTATTGGTGGAGAAGAAAAGATTTGGAAGGGACAGATGCAAGAGGCACAAAGGTGAAGATGATGCTTCAGAGAACTGTAACATGAAGTCCTTTGGTGATCCAGATGGATGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACACTGAGGTCGATGTCCGCATCATTGATGATGAAGTTACTATCAAACTTGTTCAGAGGAGGAAGATCAGCTGCTTGCTGTTTGTCTCCGAGGTTCTGGATGAACTTGAACTGGATCTTCATCATGTTGCTGGTGGGCATGTTGGTGAATATTGCAGTTTCTTGTTTAATAGCAAGATAAATGAAGGTTCTTCAATATATGCAAGTGCTATAGCCAACAAGGTGATTGAGGTTCTGGACAGGGAAggcaccaccaccactcatGACTGCCACGGGAAATACAATTTTGCATTGGAGAAACaaaggagagaaagagaagagttGAATGGCAAATACACAGTACTGAGGACTCTGATTCCGAAACTCACCAAGGTAGATAGAGAATCTGTGATGAAACTGGAAGAGTGA 1578 0.4436 MAEGAVSQDSFPQTVAAPLPPSPPLMAAGNGLEENLRHCVEELSYHHHQHNPPRPDDASAFATSVEIAHPQHPVLNMGNSYNNETVGTHLVQHVIDVLSYEHSSWDPSVQEFQDLVYANHYHDQQQQQFQQMEAQSYNNSSSILGPSPDLLNLNLLHLPRSSANSSLLANSTQKIPANFQNSIGFLGELSMGVDTASASSVMYDPLFHFNLPPQPPAPLKELFQSPPRGYSLPPSSRNGGSLFGGGDDTEGNGIVYQDGDGSQLDNNGVLEFNTGTACVAKGREGKGTKHVATEKQRREQLNGKYHVLRSLIPNPTKADRASVVGDAIGYIRELIRTVNELKLLVEKKRFGRDRCKRHKGEDDASENCNMKSFGDPDGCIRTSWLQRKSKDTEVDVRIIDDEVTIKLVQRRKISCLLFVSEVLDELELDLHHVAGGHVGEYCSFLFNSKINEGSSIYASAIANKVIEVLDREGTTTTHDCHGKYNFALEKQRREREELNGKYTVLRTLIPKLTKVDRESVMKLEE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2611 525 MobiDBLite consensus disorder prediction 226 260 - -
Sto13g2611 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Sto13g2611 525 PANTHER TRANSCRIPTION FACTOR BHLH91 482 521 - -
Sto13g2611 525 PANTHER TRANSCRIPTION FACTOR BHLH91 44 475 - -
Sto13g2611 525 SMART finulus 291 340 IPR011598 GO:0046983
Sto13g2611 525 Coils Coil 488 508 - -
Sto13g2611 525 CDD bHLH_AtMYC1_like 290 354 IPR045896 -
Sto13g2611 525 Gene3D - 280 349 IPR036638 GO:0046983
Sto13g2611 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 348 IPR036638 GO:0046983
Sto13g2611 525 MobiDBLite consensus disorder prediction 1 27 - -
Sto13g2611 525 Pfam Helix-loop-helix DNA-binding domain 288 334 IPR011598 GO:0046983
Sto13g2611 525 PANTHER TRANSCRIPTION FACTOR BHLH91 44 475 IPR045895 GO:0006355|GO:0048658
Sto13g2611 525 PANTHER TRANSCRIPTION FACTOR BHLH91 482 521 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2611 Sto-Chr13 32095670 32100689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2611 144 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 43.213 2.16e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2611 HLH 6.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2611 - - gmx:100782512 551.592