Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2607 ATGTCTATAATCGAGACCCCCACCGTCGATTGCGTTCATCAGCGCGGTGGAGGCGGCACCGATCACCACCGTGTCTCAGCTAAACGGAAATTAGATGATTACGGGCCTGCCTTGGACGATGACGACAACTATGCTGATTACTGTGACTTAGTATCGGTAAGAATGAGGAAAGACGAACCTAAAGCTGTAAATTCCTGTAATTCTCACACTGTGAACAGGTCTGTATCAGATGTTGATACTAGGATATCGGACGCTGTCTCGCATGCTTGTTCGTCCTCGCGGTCCCAGTCAACTTCGTCAAGGTCGAAATTGCAGTTTTTCGTTCGAATGATGCCGGAAGGTAGAACATTGGTAATGCGAGGTTGCCCACAAGATACGGTGAGATCGATTCATGAGCGTATCCAAACAATTACGGGCTTTCCTCTGTTTGAACAGAGACTGATATATATGGGTAAGCAGCTTCAGTGGGAACAGACTCTGGTGGAGTGCTCCATTGAGAAAGATTCTAATCTTCAATTGGTGGGGCGTATGCGCAGCACAGAATACCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCCCTAATTTGGCGTCTCTGCCGAGGTGAAATGGAACATGATGCTTTGAAATCTATCAAAGGCTTCATGACGGATTACTTAGGCATGACCCCTAGAGTTGACAATGATTCTGTTTCTGGGTATTTCCAGATATTTATGAATGCATCTGCTCCGGCAGTGCTAGTAATGCTCTATATGTCGCCCTATACGGGTAACAAAGAATGTGCTGATAGTTCTATTAGGCATTTTatgagttcctgttgcactgcCTTGTCTAAGTCAATGCATACTAAGTGTGCACGAGTAGTGTTGGAGTTCTGCAAATTGCTTAGAAGCGTGGCTTCTGAGGACCCTTTGTATCTCTCTTGTCGGAGTACATTTGGGTCTTTATTGGAGACTGCTGGTATTTTTTCCTATGGTTCTGAGAGTGAGAAGGATTTGATTTTAATTCAAGATATATTCCCGTTTGTTTGTGAGCTTGCAAATAGATTAGTGAGGGGTTTGGATATGAGTATAGAATCCCCCACTAGTGTAGGGCCATCATTGAGTGATGTTCGGGATTTTACTGCATTCTTACTCCCTTTAAGGACTAGAATCAGGGAGCAACAAGCTTGCAAGGGTCTGTATTCTTCGAAGATGGATGGAAAACGAAATAAGCACCTCTTACTTGTGGAAGAAAACCAATACCTCCGTCATGTATTTATTGACATATTAATGAAAATGGATCAGTGCCTTAATAAAATGGGGGAAATCTTGGCTGCCAAGGAAAGAATGGAGGGGGATAATCTTTATTCCGCATGGTCTCAGTATCTTTCCATCTTGAAGGAACTGTATCACCTTTCTAAGCTGCACGACGGAGCTGAGGAAGAATTTTGGTCAGTTTTGAGATCTCAAAGAAATATGCTAATTGTACTTATCATTCAGTATGCGAAGAGAACTGATGATCATCAGTGGCTTCTTGAGCACAAATATGTAACCAATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCGGAGGTAAAAGAAGATTATGAGGAATTGCATGAGATGCTCATTGACAGGTCTCAGTTGTTGGCAGAATCATTTGAATACATAGCACGAGCGGAGCCTGAATCTCTACATGCTGGCTTGTTTATGGAGTTCAAAAATGAGGAAGCCACGGGCCCAGGTGTACTGCGGGAGTGGTTTTTCTTGGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCCACTGACCGGAGGAGATTTCTCCCTAATCCTGCGTCTGTGGTACATCCTCTGCACCTTGAGTACTTCACCTTCTCCGGTCGAGTAATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAAGTATGTTACTTTAGAAGATATACGGGATGCTGATCCTTATTTGTATAGTAGCTGCAAGCAGATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGAAAAGTGGTTGAGCTTTGCCCTGGTGGGAAAAGCATTGCTGTGAATAGTAAGAACAGGGATAAGTATGTTGATCTTCTTATACAAGATCGTTTCGTAACATCTATATCTGAGCAGGTGTCACACTTTGCCCGAGGTTTTGCTGATGTTCTTTGCAACCCACGGCTGCAGCAGTTCTTCTTTAAAAGTTTAGATCTCGAAGATCTTGATTGGATGCTGCACGGGAGTGAAAATACCATTTCAGTTGAAGATTGGAAGACACATACCGAGTATAACGGATATAAGGAGACAGATCCTCAGATTTGTTGGTTCTGGGAGATTGTTGGGAGAATGTCAGTGGAACAAAGGAAGCTTCTTCTGTTTTTTTGGACATCTGTGAAGTATTTGCCTGTGGATGGTTTCCAAGGGTTGGCTTCCCGTCTCTACATTTACAAGTCCATGGAACCCGTGGATCGGCTTCCTTCGTCGCACACATGCTTTTTCCGGCTGTGTTTCCCGCCCTATCCGTCTATGTCTGTCATGCAAGATCGTCTTCGAATCATCACACAAGAACATATTGGCTCCAGCTTTGGTACTTGGTGA 2694 0.4306 MSIIETPTVDCVHQRGGGGTDHHRVSAKRKLDDYGPALDDDDNYADYCDLVSVRMRKDEPKAVNSCNSHTVNRSVSDVDTRISDAVSHACSSSRSQSTSSRSKLQFFVRMMPEGRTLVMRGCPQDTVRSIHERIQTITGFPLFEQRLIYMGKQLQWEQTLVECSIEKDSNLQLVGRMRSTEYPQAWQVINDMVSLIWRLCRGEMEHDALKSIKGFMTDYLGMTPRVDNDSVSGYFQIFMNASAPAVLVMLYMSPYTGNKECADSSIRHFMSSCCTALSKSMHTKCARVVLEFCKLLRSVASEDPLYLSCRSTFGSLLETAGIFSYGSESEKDLILIQDIFPFVCELANRLVRGLDMSIESPTSVGPSLSDVRDFTAFLLPLRTRIREQQACKGLYSSKMDGKRNKHLLLVEENQYLRHVFIDILMKMDQCLNKMGEILAAKERMEGDNLYSAWSQYLSILKELYHLSKLHDGAEEEFWSVLRSQRNMLIVLIIQYAKRTDDHQWLLEHKYVTNFESRRHLVMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQAIFNPQNALFVACPTDRRRFLPNPASVVHPLHLEYFTFSGRVIALALMHRVQVGIVFDRVFFLQLAGKYVTLEDIRDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKSIAVNSKNRDKYVDLLIQDRFVTSISEQVSHFARGFADVLCNPRLQQFFFKSLDLEDLDWMLHGSENTISVEDWKTHTEYNGYKETDPQICWFWEIVGRMSVEQRKLLLFFWTSVKYLPVDGFQGLASRLYIYKSMEPVDRLPSSHTCFFRLCFPPYPSMSVMQDRLRIITQEHIGSSFGTW 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2607 897 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 89 895 - -
Sto13g2607 897 Gene3D - 96 191 - -
Sto13g2607 897 Pfam Ubiquitin family 107 178 IPR000626 GO:0005515
Sto13g2607 897 Gene3D Hect, E3 ligase catalytic domain 657 739 - -
Sto13g2607 897 ProSiteProfiles HECT domain profile. 557 897 IPR000569 GO:0004842
Sto13g2607 897 ProSiteProfiles Ubiquitin domain profile. 104 180 IPR000626 GO:0005515
Sto13g2607 897 SUPERFAMILY Ubiquitin-like 105 192 IPR029071 -
Sto13g2607 897 SUPERFAMILY Hect, E3 ligase catalytic domain 532 884 IPR035983 GO:0004842
Sto13g2607 897 Pfam HECT-domain (ubiquitin-transferase) 586 889 IPR000569 GO:0004842
Sto13g2607 897 CDD HECTc 536 895 IPR000569 GO:0004842
Sto13g2607 897 Gene3D Hect, E3 ligase catalytic domain 780 896 - -
Sto13g2607 897 SMART hect_3 555 895 IPR000569 GO:0004842
Sto13g2607 897 SMART ubq_7 104 176 IPR000626 GO:0005515
Sto13g2607 897 PRINTS Ubiquitin signature 115 135 IPR019956 -
Sto13g2607 897 PRINTS Ubiquitin signature 136 156 IPR019956 -
Sto13g2607 897 PRINTS Ubiquitin signature 157 178 IPR019956 -
Sto13g2607 897 Gene3D Hect, E3 ligase catalytic domains 537 763 - -
Sto13g2607 897 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 89 895 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2607 104 178 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 4.30e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2607 - - gmx:100789233 1328.54