Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2581 ATGGATGATCCTAGCTTTTATCACCAATGGCACTTGAGCTCTCTTGATGAGCCTACCTTACTGCCAATAGCTGCTGCTTTTGGAGAGACCTTACAACAACATTCATTCTCTAATATTACTCCAAACTTTAACCCCAAAACTTCTATGGGAACTACATTTTCTGCCATTGAAACACCCCAAAAGCACTTCAAACCCAACAATTGGAGTCCCAACGACAAAAGTGATCACAAATATCAGACAATTATGGACACAGACTATGATTCTTGTCCCAATAATCTTGTTTCCTTTGTGAACTCAGATTACATAACCCAATTGGGATCTTTGAAGCCTAAGGTAGAGACAGTGTGTCCCAACACCACAAATATGGTCCACTCAGACATGTTGGTCTCTCATGGATCCTTAGGAAATCAGAACTTTGTCTTCAAGGCAAACCAAGATTCCAGAAAGAGGGGATCAAGCCCTAAACTTTCTCAACCTCAAGACCACATTATAGCTGAAAGGAAGAGGCGAGAGAAACTCAGCCAGAGGTTCATTGCTCTGTCTGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTTCTTGGAGATGCTATAAAGTACTTGAAGCAATTGCAAGAGAAAGTGAAAGTCCTTGAAGAGGAACAGACTAGAAGGAAAACAGTGGAATCTGTGGTGATAGTGAAGAAATCTCAATTATTTGGAGATGATGAAGGAGGCCACTCTTGTTCAGATTCTGGTGGTCCCATTGATGAAGCACTGCCTGAGATCGAAGCTAGATTTTGTGAAAGAAACGTGCTCATTAGAATTCACTGTGAGAAAAGGACAGGAGTTGTAGAAAAAACAATGAGTGAAATTGAGAAACTCCCTCTAATTGTCAATGGCAGCAGTGTAATGACATTTGGGACTTCCGCTCTTGATATAACAATAATTGCTCAGATGGATTCGGAATTCAGTATGACAGTGAAGGATGTAGTAAGAAACCTACGCTCAGCTTTTGAATCTTTCATGTGA 1017 0.411 MDDPSFYHQWHLSSLDEPTLLPIAAAFGETLQQHSFSNITPNFNPKTSMGTTFSAIETPQKHFKPNNWSPNDKSDHKYQTIMDTDYDSCPNNLVSFVNSDYITQLGSLKPKVETVCPNTTNMVHSDMLVSHGSLGNQNFVFKANQDSRKRGSSPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQLQEKVKVLEEEQTRRKTVESVVIVKKSQLFGDDEGGHSCSDSGGPIDEALPEIEARFCERNVLIRIHCEKRTGVVEKTMSEIEKLPLIVNGSSVMTFGTSALDITIIAQMDSEFSMTVKDVVRNLRSAFESFM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2581 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Sto13g2581 338 CDD bHLH_AtNAI1_like 160 232 - -
Sto13g2581 338 PANTHER BHLH TRANSCRIPTION FACTOR 1 337 - -
Sto13g2581 338 SMART finulus 163 212 IPR011598 GO:0046983
Sto13g2581 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Sto13g2581 338 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 1 337 - -
Sto13g2581 338 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Sto13g2581 338 Gene3D - 157 229 IPR036638 GO:0046983
Sto13g2581 338 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2581 Sto-Chr13 31927993 31929349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2581 34 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.795 6.72e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2581 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2581 - - aprc:113852973 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2581 13 31927993 31929349 Sto13g2581 13 31927993 31929349 CCT
Sto13g2581 13 31927993 31929349 Sto13g2581 13 31927993 31929349 ECH