Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2571 atggagaactATTCGTACCCTTCGTACCCAGATTCCGGCGACTCCTCTCCGCGCTCTAGAGAGGTTGAATTCGAGAACCCTCCGCCGTGGGACGAGCAGCAACCGCCTCCAAATTACAAAGCTAAATTCATGTGCAGCTATGGCGGCAAGATCCAACCCCGTAGCCACGACAACCAACTCTCCTACGTCGGCGGCGAGACCAAGATCCTCGCCGTTGACCTCAACATCAAGTTCTCCTCCATGATTTCCAAGCTCTCCGCCATCTGCGACGGCGCCGATGTCACCTTCAAGTACCAGCTCCCCGGCGAGGAGCTCGACGCTCTCATCTCCGTCACCAACGACGACGATCTCGAGCACATGATGCACGAGTATGATCGCCTCTACCGTGCCTCCGCTAAGCCCGCTCGCATGAGGCTCTTCATCTTCCCTATCAATAACAGCCAACCCGCGAGTTTTGGTAAGCCCGCGCCTGTTCCAGGCGGCAACGTCGACTATCTCTTCGGTCTGGAGAAAGGAATTCATCCGGCACAACCACCGCCGGCAGCCGTGAAATTTCATGATCCAGTTCCGGGACCGGTGGTGCCGCCGCCGGAGTACCAAATACGCGGTGTACCTGAACGTGCAATCGGGTCGGATCCGATGGTGAACCCGATTGAGATACAGAGGCAGTTCCAGAGAATGCAAATTGGGGAGCATGATCAACCAGTGTACCGGAGAAAGAGCGAGGATAATATCGCAGGAGGTTATGCTGCTGGAGATTATTATGCACAGAAGTTCTCTGAGAAAGCTCCGCCGTCGAATTTACCGGCCGCCGTGCCACACACCGGTGGTTATTGGTCGGAAAAGCAGGTTTCCAGCGAGGGATTTCCGCCCACGACGGCGTCAAACGGAGCCGGAGGCGCAGACCATCAGGTTTATGTAATCCCATCGCAGGGGACATTCTATCACGCGCCGCCGGTGGTGCGTCCACCGGCGGCACCAGCAACTCAAGGTTACTACACAGTGCAGCGAATGGTCTCCGATGGTTACCGTGAGCAGCCGGTGTACAGCGCGGCGCCGCCCCCGAGGGCGCCATTTTCATCGGCGGCTCCGGCGACCTTAGCACCGCCTCAGCCTGTCAAATCTTCCCCGTACGCTGAAGGATTCAGCGTCGTGCGGCCACCTGGAATGCCGGATAATTCAGCTGCGTACGCGCAGGTGGCGTACGATAGTGCAGCTGGGAGGCAGTTTTACTATACTGCGCCGGGAGGAGGGATGGTGCACCCGCCACCGTACCAAGGGGTTGCTCCGGCGGTCGGCGCTGATATAAGACCGGTTGGGGTATCATTGGGTCAGGATCTTAAAGTGGTAAACAAGGTCTCTCAAGGTTCTGTGTGa 1377 0.573 MENYSYPSYPDSGDSSPRSREVEFENPPPWDEQQPPPNYKAKFMCSYGGKIQPRSHDNQLSYVGGETKILAVDLNIKFSSMISKLSAICDGADVTFKYQLPGEELDALISVTNDDDLEHMMHEYDRLYRASAKPARMRLFIFPINNSQPASFGKPAPVPGGNVDYLFGLEKGIHPAQPPPAAVKFHDPVPGPVVPPPEYQIRGVPERAIGSDPMVNPIEIQRQFQRMQIGEHDQPVYRRKSEDNIAGGYAAGDYYAQKFSEKAPPSNLPAAVPHTGGYWSEKQVSSEGFPPTTASNGAGGADHQVYVIPSQGTFYHAPPVVRPPAAPATQGYYTVQRMVSDGYREQPVYSAAPPPRAPFSSAAPATLAPPQPVKSSPYAEGFSVVRPPGMPDNSAAYAQVAYDSAAGRQFYYTAPGGGMVHPPPYQGVAPAVGADIRPVGVSLGQDLKVVNKVSQGSV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2571 458 SMART PB1_new 55 144 IPR000270 GO:0005515
Sto13g2571 458 CDD PB1_UP2 44 142 - -
Sto13g2571 458 Gene3D - 61 142 - -
Sto13g2571 458 MobiDBLite consensus disorder prediction 1 15 - -
Sto13g2571 458 MobiDBLite consensus disorder prediction 1 37 - -
Sto13g2571 458 Pfam PB1 domain 56 143 IPR000270 GO:0005515
Sto13g2571 458 PANTHER OS05G0427100 PROTEIN-RELATED 1 451 - -
Sto13g2571 458 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 451 - -
Sto13g2571 458 SUPERFAMILY CAD & PB1 domains 56 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2571 Sto-Chr13 31839663 31841105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2571 39 142 MAP Kinase Kinase Kinase AT5G57610 48.077 4.25e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2571 - - adu:107480527 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2571 13 31839663 31841105 Sto13g2571 13 31839663 31841105 CCT
Sto13g2571 13 31839663 31841105 Sto13g2571 13 31839663 31841105 ECH