Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2566 atgggAAGAGGGAAGATAGTGATTAAAAGGATAGAAAATAGCACAAAGAGGCAAGTGACATTCTCAAAGAGAAGGAATGGATTATTGAAGAAGGCAAGAGAACTATCTATACTTTGTGATGCTGAAATTGCAGTTATCATCTTCTCCACCACTGGTAGGCTCTATCATTACGCAACCTCTAGTATGAAATCCACCATCGAACGCTATAATAGTAGAAACAGGGATGATCACAATCAGCTCTTGATGAATAATCCAGCTTCTGAAGTCAAGGACCGAATTCTCACAGATGAAATTGAAAAGCTCAATCGGAAGGTATGTGAAGCAGAAGGTGATGCAAATGAAGCAAAAAATAGCTGTCGCAATGAATACGATATTCAAATAACTGATCGGCCTCAACCTCTAAACCAAGTTACACCAGAAGAAGCTTTCAATGCTGTTGCTGGTGGCATTGCTCCTGTTGCTCCCAGTAGCACAGGGAGGTTGATCAGTGGAATCCATGATTGTTTGGGGAATTTCTTGTGCAATAGCCACACAATTATGGGCCCTATTGCTCCTCCAAGGAAGAACCAGTTCATTGCACTGACTGTCCGCGGGGAGGACGTCGTCGTGGCATATGTTCTTGATGGTGGTCAGCAACCACCATGCCACCCCAATGTTGATGGTTCCAGCAAGCATGGTACCTATGAACTATACATTTATGAACAAATGGGGTGCATCAGAAGTTATAATATAGTGTCCAAGCTTGAAATCACTAAGGAAGGAGACAGCCTGAGCCATGCTTATGTAACCATAGGTTTTGAAGCATACATTTGCTATTGGTCTTCCAGGATAAATGAGACCAAAGACATACTCGGTAATGATATTCAGCCCTGGCCATGGCTGCAGCAAATAGGAGCCCCCACCAAGGCATCTGAACCTGATCATTTAGAAAGATGCATAGTGCAAGAGACACTAGAAATGTCACGCCAAGCAACACATGAAACCACCAAGAAGACATTGACAATGGCAAAGAAGGGGGAGATAAGAGGGCTGAACAAGAAAGATGCCACGGCGGTCCAATCCAGTGTGAGGGCTCCAAGTCCTAAGCCTCTCATGCCAGAGCCTATCTGTTGA 1113 0.4385 MGRGKIVIKRIENSTKRQVTFSKRRNGLLKKARELSILCDAEIAVIIFSTTGRLYHYATSSMKSTIERYNSRNRDDHNQLLMNNPASEVKDRILTDEIEKLNRKVCEAEGDANEAKNSCRNEYDIQITDRPQPLNQVTPEEAFNAVAGGIAPVAPSSTGRLISGIHDCLGNFLCNSHTIMGPIAPPRKNQFIALTVRGEDVVVAYVLDGGQQPPCHPNVDGSSKHGTYELYIYEQMGCIRSYNIVSKLEITKEGDSLSHAYVTIGFEAYICYWSSRINETKDILGNDIQPWPWLQQIGAPTKASEPDHLERCIVQETLEMSRQATHETTKKTLTMAKKGEIRGLNKKDATAVQSSVRAPSPKPLMPEPIC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2566 370 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Sto13g2566 370 MobiDBLite consensus disorder prediction 346 370 - -
Sto13g2566 370 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 91 - -
Sto13g2566 370 PANTHER - 1 91 - -
Sto13g2566 370 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sto13g2566 370 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto13g2566 370 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2566 Sto-Chr13 31785763 31791675 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2566 1 90 MADS-box Gene Family AT4G37940 68.889 2.75e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto13g2566 SRF-TF 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2566 K09264 - mnt:21397917 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2566 13 31785763 31791675 Sto13g2566 13 31785763 31791675 ECH