Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2564 atggGGAGAGGGAAGATAGCGATTAGAAGGATCGAGAATCCAACGAACAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAAGGAACTTTCAGTTCTTTGTGATGCTGAAGTTGGATTGATGGTCTTCTCTAGCACAGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAAAGTGTTATCGAGCGctacaacaaattaaaagaggAACATCTTATGCTCATGAATCCTGCTTCAGAAGTCAAGGCGAGGGAGCTTGAAAGCAAGAATGGACTAACCAGACTAGCACAAACAATAGCAAAACTAGATATACTATGCATCATAGCTACCTGA 348 0.3937 MGRGKIAIRRIENPTNRQVTFSKRRNGLLKKAKELSVLCDAEVGLMVFSSTGKLYDYASTSMKSVIERYNKLKEEHLMLMNPASEVKARELESKNGLTRLAQTIAKLDILCIIAT 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2564 115 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Sto13g2564 115 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Sto13g2564 115 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Sto13g2564 115 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 93 - -
Sto13g2564 115 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto13g2564 115 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2564 Sto-Chr13 31751551 31759048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2564 1 93 MADS-box Gene Family AT4G37940 72.043 9.15e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto13g2564 SRF-TF 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2564 K09264 - gmx:100808145 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2564 13 31751551 31759048 Sto13g2564 13 31751551 31759048 CCT