Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2552 ATGGATACGGTGAATCCGCAGCCTCTGCAAGAGCGGCCCTACGAGGGAGGAGAAGGCCAACAACTGGTGCGAGCTCCCGTGGAGGTGAATGGGGTCGAAGGTGGATTGCACGGGCAATATGCTAATGGAGGTCGTGATGAGGTCAATGGTGCTAATGGTTGTACTATGCAGTCTCGGACGAGTGAGCTCACTATTGCGTTTGAAGGCGAGGTCTATGTTTTCCCGGCGGTTACACCTGAAAAGGTTTGGTTCCTTTTGCATCCTCCTCTATGGTTCCTCACTCTTGAAAAAAGAAAACCACCTTATCTCAATTGTGTGGATACTTTGAGGGATGGCAACATCAACCAGTTGAAGCTCTTCTACCATTTAGAAGTCAGAGGATTCAATCAAGGGATTATTCACAAAACAGTTCAGGCTGTATTATTACTATTGGGAAGGTGTGAGATGCCCAATAATGACCCCAGCTCTGATTTTTTGCCTCAACAGAACGGGCAGAACCTCTTGGGAATAAATGAAGCTTCCCGAGGTTCAAAGCTTTTGCGGAGAACTGCATCTCTTGTGAGGTTTCGTGAGAAGCGTAAAGAGAGATGCTTTGACAAGAAAATCCGTTACACTTGTCGTAAAGAGGTTGCTCAAAGGATGCTTCGTAAGAATGGACAGTTTGCATCAATGAAGGAATGCTACAATTCTGCTGCTGAAAACTTGGATTCAAGCAATAGTGCTCTTTGTTCAGAACCAATTTTAAGTGAACGGAGATGCCAACACTGTGGAATCAGTGAGAAATCTACCCCAGCTATGCGTCGAGGACCAGCTGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCCAACAAGGGAACCCTGAGAGACCTCAGCAAAGCAGGAAAAATCACTTCTCTTGAACAAAATGAACTAGATACTTCAGGTGATATAAAGCCGTCAACTGCAGAACCAGAAAATTCCTGTCCCAATCAGGATGAAGCGGGAAGCCTAGATGAGTCTAAACCCGTACCAGTAGATTCCATTCAATCACCCAGAAGGACAAATGAGCAGTATATGGTTGAAGCTATTAAAGCTGTTACTGACAACTTGTCTATCCAAGTGGAGAATCCTGCTGTTGATCTGCATGAGCAGGATACACTTGAGGATATTGCTGATGCATCTGGCACAGAATTTGAGATTCCTGCCGGTTTTGATGAGCAGGTTGATATCGATGATTCAAACATGAAGACTTACTGGTTTTGA 1251 0.4532 MDTVNPQPLQERPYEGGEGQQLVRAPVEVNGVEGGLHGQYANGGRDEVNGANGCTMQSRTSELTIAFEGEVYVFPAVTPEKVWFLLHPPLWFLTLEKRKPPYLNCVDTLRDGNINQLKLFYHLEVRGFNQGIIHKTVQAVLLLLGRCEMPNNDPSSDFLPQQNGQNLLGINEASRGSKLLRRTASLVRFREKRKERCFDKKIRYTCRKEVAQRMLRKNGQFASMKECYNSAAENLDSSNSALCSEPILSERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGKITSLEQNELDTSGDIKPSTAEPENSCPNQDEAGSLDESKPVPVDSIQSPRRTNEQYMVEAIKAVTDNLSIQVENPAVDLHEQDTLEDIADASGTEFEIPAGFDEQVDIDDSNMKTYWF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2552 416 Pfam GATA zinc finger 253 289 IPR000679 GO:0006355|GO:0043565
Sto13g2552 416 Gene3D - 248 306 IPR013088 GO:0006355|GO:0008270
Sto13g2552 416 ProSiteProfiles CCT domain profile. 182 224 IPR010402 GO:0005515
Sto13g2552 416 MobiDBLite consensus disorder prediction 1 20 - -
Sto13g2552 416 Pfam CCT motif 182 223 IPR010402 GO:0005515
Sto13g2552 416 MobiDBLite consensus disorder prediction 301 346 - -
Sto13g2552 416 ProSitePatterns GATA-type zinc finger domain. 253 280 IPR000679 GO:0006355|GO:0043565
Sto13g2552 416 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 301 - -
Sto13g2552 416 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 132 407 - -
Sto13g2552 416 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 1 83 - -
Sto13g2552 416 SMART GATA_3 247 300 IPR000679 GO:0006355|GO:0043565
Sto13g2552 416 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Sto13g2552 416 MobiDBLite consensus disorder prediction 301 330 - -
Sto13g2552 416 CDD ZnF_GATA 252 295 IPR000679 GO:0006355|GO:0043565
Sto13g2552 416 PANTHER GATA TRANSCRIPTION FACTOR 28 132 407 IPR045280 GO:0006355
Sto13g2552 416 PANTHER GATA TRANSCRIPTION FACTOR 28 1 83 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2552 Sto-Chr13 31637757 31643748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2552 115 301 Tify Gene Family AT1G51600 52.604 2.65e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto13g2552 CCT 2.5e-14 CL0281