Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2536 ATGTCTGAGCTCGAAGCTTCCCGctccgagaagaagaagaagaagaagcaccgAGACAATGACGAAAACATTGACCTTGCCGATTCCGATTTCATGATCAAACCCCAGAGCGTCACTCCCTCCATCGACACCTCCCAATGGCCGATTCTCCTCAAGAACTACGACCGCCTCAATGTCCAAACCGGACACTACACTCCCATTCCCTCCGGTTACTCCCCCCTCAAGCGCCCTCTTCTCGAGTACATCAAATACGGCGTCATGAATCTAGACAAACCCGCCAACCCTTCTTCCCACGAGGACGTCGCTTGGATTAAACGCATCCTCCGGGTCGAGAAAACGGGTCACAGCGGTACCCTTGATCCCAAGGTGCTGGGAAAGAGTATGTGTGTTGCCCGTTTGCACTCTGATGTGCCAGAGGTTGCTAAAGTGGCGCGTGCTCTCGAAACGCTCACCGGAGCTGTGTTTCAGCGGCCGCCGTTGATTTCTGCGGTGAAGAGGCAGCTTAGGATCAggaatatatatgaaaGTACGTATGTGAGGACTCTGTGTGTTCATTTGGGTTTGATTCTTGGTGTGGGAGGGCATATGCAGGAGCTTAGGAGGGTGCGTTCGGGTATTTTGGGTGAGAAAGATAATATGGTGTCTATGCATGATGTGTTGGATGCGCAATGGGTTTATGATAACTATAGGGATGAGACTTATTTGAGAAGGGTTATTATGCCTCTGGAAGTGCTTTTGACCAGCTATAAGAGATTGGTTGTGAAGGATTCTTCTGTTAATGCAATTTGTTATGGAGCAAAGCTAATGATTCCTGGGTTGCTGAGATTTGAAAATGATATTGAGGTTGGGGAGGAAGTGGTGCTTATGACTACCAAAGGTGAAGCTATTGCTTTGGGAATTGCCGAGATGACTACTGCTGTAATGGCTACATGTGACCATGGTGTGGTAGCCAAGATCAAAAGAGTGGTTATGGATAGGGATTTGTATCCGAGGAAATGGGGTTTAGGACCAAGAGCATccatgaagaagaaaatgattgcAGAAGGGAAGCTAGATAAGCATGGCAAGCCAAATGAAAATACTCCCCAAGAGTGGCTGAGGAATCTGGTTTTACCTACTGGCGGGGATTCTATTGTTGCGGGTATGGCTGCTTCATCTGAACCAGATGCAGGCAAGGAGAGTGCTGTAGTGGAAAAGGAAAAGATTGAGAGTAAGGACGAAGGGCGTAAGAGAAAAATTGCTGAAAATAGTGATAGCCCTGTTCCTCTCCCCAGTAAAATGGCCAAatttgaagaaattgaagagGCTACAAGGGAAGTAACACCGAAGATGAAGAAGGTAGAAGAGGACATTGTGGAGAATGAAGTtgataagaaagagaaaaagaaaaagaaaacgaaGGAACAAGAGACTGCATCCTCAGATGAGGAGAAATctggaaaagagaagaaaaagaagcacaAAGAAAAGGCTGAAGCTCTCTCGCCAGATACAGAGAAGtctgagaagaagaaaaagaagcacaAAGAGAAGACCGAAGTCGCTTCACCTGATAATAGTAAGtctgagaagaagaaaaagaagaaggacaaAGATGCTAAAAATAATGCTAGTGAGTAA 1620 0.4154 MSELEASRSEKKKKKKHRDNDENIDLADSDFMIKPQSVTPSIDTSQWPILLKNYDRLNVQTGHYTPIPSGYSPLKRPLLEYIKYGVMNLDKPANPSSHEDVAWIKRILRVEKTGHSGTLDPKVLGKSMCVARLHSDVPEVAKVARALETLTGAVFQRPPLISAVKRQLRIRNIYESTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVSMHDVLDAQWVYDNYRDETYLRRVIMPLEVLLTSYKRLVVKDSSVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDLYPRKWGLGPRASMKKKMIAEGKLDKHGKPNENTPQEWLRNLVLPTGGDSIVAGMAASSEPDAGKESAVVEKEKIESKDEGRKRKIAENSDSPVPLPSKMAKFEEIEEATREVTPKMKKVEEDIVENEVDKKEKKKKKTKEQETASSDEEKSGKEKKKKHKEKAEALSPDTEKSEKKKKKHKEKTEVASPDNSKSEKKKKKKDKDAKNNASE 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2536 539 MobiDBLite consensus disorder prediction 428 539 - -
Sto13g2536 539 SMART pua_5 250 324 IPR002478 GO:0003723
Sto13g2536 539 Pfam DKCLD (NUC011) domain 44 99 IPR012960 -
Sto13g2536 539 Pfam PUA domain 250 322 IPR002478 GO:0003723
Sto13g2536 539 MobiDBLite consensus disorder prediction 379 539 - -
Sto13g2536 539 Gene3D PUA domain 45 87 IPR036974 GO:0003723
Sto13g2536 539 Gene3D PUA domain 230 369 IPR036974 GO:0003723
Sto13g2536 539 Gene3D - 129 172 - -
Sto13g2536 539 SUPERFAMILY PUA domain-like 249 330 IPR015947 -
Sto13g2536 539 SMART DKCLD_2 43 101 IPR012960 -
Sto13g2536 539 TIGRFAM CBF5: putative rRNA pseudouridine synthase 128 334 IPR004802 GO:0006396
Sto13g2536 539 Gene3D Pseudouridine synthase 173 225 - -
Sto13g2536 539 Gene3D Pseudouridine synthase 88 128 - -
Sto13g2536 539 SUPERFAMILY Pseudouridine synthase 44 247 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sto13g2536 539 ProSiteProfiles PUA domain profile. 249 324 - -
Sto13g2536 539 Pfam tRNA pseudouridylate synthase B C-terminal domain 180 246 IPR032819 -
Sto13g2536 539 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 11 176 IPR004802 GO:0006396
Sto13g2536 539 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 177 534 IPR004802 GO:0006396
Sto13g2536 539 MobiDBLite consensus disorder prediction 1 27 - -
Sto13g2536 539 Coils Coil 444 469 - -
Sto13g2536 539 MobiDBLite consensus disorder prediction 392 416 - -
Sto13g2536 539 TIGRFAM unchar_dom_2: uncharacterized domain 2 245 321 IPR004521 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2536 Sto-Chr13 31529198 31530941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2536 1 429 NAC Transcription Factor Family AT3G57150 70.339 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2536 K11131 - jre:108999000 696.427