Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2531 ATGCCAAGCAAGTTTGGAGCACTGGGTagcaaaagtttcaaatttggGATTGTTCAAGATTGGACCAACTGGGTTGTCCAGGTCCCACATTACCACCGCACAAACGTCAAAGGTAGCTTGGCCTTGGGGAGCAGATCTATAGAGAAATATGGAGCTAAATCTGAAGGACACAGAGCTAAGAAGGGAAGCTCAAGGGAAGAGGAGGAGTCAATAAGCAAGAGTAATAACGTTTCTAATTCCAAGGCTTCTGAAGATGAGCAAGAgcaagacaataataataatagtactaCACCTCCACCTCCACCTGCAAAGGCATGCAAACACTTTAAATTGTTCAATGGGTTGCAATGTATGAATTCATCTCTTGGACATGGACTTGGATCTGATTTGGCATTTGTCCGATTGGATTCTAAATTCTCCTCGAGTAACAAGGGAGTTAGTAGAAACAAGGCAACAGTTATCTCTGGAGGAGGTGACCTTTCTTTTTATTCAAATATAAATGATGTTAAGAAACAACCTGAAGGAATAGCTTATGGAACACTAGCACCAGATACAGCAGTAACAAGCAATGGTTTTCCTGTTGACGATGATGAATTTGATTCGGACAGCCCCACAGAAGGTTTTGCTTCCATTCCTGAGGCAATTGAGGATATTCGCCAAGGAAGGGTTGTtaatcctctctctctctcttcccttgttttttccttttttttttttttgaagtgtgCTGGAGATGACGAGGACAGAGAAAATGAAGGAGACCTGATAATGGCTGCACAGTTAGCGACGCCTGAGGCTATGGCTTTTATTGTAAAGCATGGAACTGGGATTGTTTGTGTAAGCATGAAAGAAGAAGATCTGGAGAGATTGGAACTTCCTTTGATGGTAGACAGTAAGGATAATGATGAGAAACTCCGAACTGCGTTCACTGTTACAGTGGATGCTAAATATGGTACCACCACTGGGGTGTCAGCCAAGGATAGGGCAACAACAGTTTTGGCTCTTGCATCCAGAGATTCAACACCGGCTGATTTCAATCGCCCAGGTCATATTTTTCCTCTAAAATACAGAGAAGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCTATACTTGCTGGCTTGGAACCTGTGGCAGTTTTATGTGAGGTTGTAGATGATGATGGTTCCATGGCTAGATTGCCAAAGCTTCGCCAGTTCGCAGAGCGTGAGAACTTGAAAATTATTTCTATTGCTGACTTAATAAGATATAGAAGGAAGAGAGATAAGTTAGTAGATCGTGCTGGTGCTGCACAAATACCAACAATGTGGGGACCATTTTTAGCTTGCTGTTATAGATCACTTTTAGACGGGATGGAACATATTGCAATGGTCAAGGGTGACATAGGAGATGGAAAGGATGTTCTTGTGAGGGTACACTCTGAGTGTCTCACTGGAGACATATTTGGATCTGCCAGATGTGACTGTGGGAATCAGCTTGCACTTGCAATGAAGCAGATTGAGGCTGCCGGTAGGGGTGTGCTCGTATATCTCCGCGGACATGAAGGAAGAGGTATAGGATTAGGCCACAAGCTTCGTGCCTATACCCTACAGGATGATGGACGAGACACTGTAGAAGCCAACGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAATATGGGATTGGTGCACAGATTTTGAGGGACTTGGGTGTTAGATCAATGAAGCTGATGACAAACAATCCAGCAAAATACGTTGGGCTGAAAGGTTATGGTTTGACAATTTCTGGTAGGATTCCATTGGTAACTCTGATCACAAAGGAGAACAAGAAATATTTGGAGACAAAACGTGCCAAAATGGGACACATCTACGGCCTGGAATTTAACGGCCAATTGAGCAGTGACAATGAGGAAGCCAGAGATATTTTCTTCGATGTAGAACATGGTCCTATGCGAACCAGTGGTCTCCAAAAATCCTTGATTAGTGAGAATATTGCAGTTTGTAAGTACAAGAAAGGGGAGGGTTTGGTGGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAGTTTGAAGATGATGAAAATCTTGGGATTTTGCCCAAGTGTAACCATGCTTTTCATGTTTCTTGCATTGATGCTTGGCTCGTGTCGCACTCAAATTGCCCCTTGTGTCGTGCCCCCATTGTGGAAGATACCCAGATGGAGACAATGGAGGATTGGAAATGA 2217 0.4208 MPSKFGALGSKSFKFGIVQDWTNWVVQVPHYHRTNVKGSLALGSRSIEKYGAKSEGHRAKKGSSREEEESISKSNNVSNSKASEDEQEQDNNNNSTTPPPPPAKACKHFKLFNGLQCMNSSLGHGLGSDLAFVRLDSKFSSSNKGVSRNKATVISGGGDLSFYSNINDVKKQPEGIAYGTLAPDTAVTSNGFPVDDDEFDSDSPTEGFASIPEAIEDIRQGRVVNPLSLSSLVFSFFFFLKCAGDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLERLELPLMVDSKDNDEKLRTAFTVTVDAKYGTTTGVSAKDRATTVLALASRDSTPADFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLEPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVDRAGAAQIPTMWGPFLACCYRSLLDGMEHIAMVKGDIGDGKDVLVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYTLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLVTLITKENKKYLETKRAKMGHIYGLEFNGQLSSDNEEARDIFFDVEHGPMRTSGLQKSLISENIAVCKYKKGEGLVEGTECSVCLSEFEDDENLGILPKCNHAFHVSCIDAWLVSHSNCPLCRAPIVEDTQMETMEDWK 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2531 738 Gene3D GTP cyclohydrolase II 430 601 IPR036144 -
Sto13g2531 738 PANTHER GTP CYCLOHYDROLASE II-RELATED 107 633 - -
Sto13g2531 738 CDD RING-H2_PA-TM-RING 679 722 - -
Sto13g2531 738 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 207 620 IPR016299 GO:0009231
Sto13g2531 738 MobiDBLite consensus disorder prediction 50 72 - -
Sto13g2531 738 SMART ring_2 680 721 IPR001841 -
Sto13g2531 738 MobiDBLite consensus disorder prediction 50 105 - -
Sto13g2531 738 Pfam GTP cyclohydrolase II 435 598 IPR032677 -
Sto13g2531 738 Gene3D DHBP synthase 200 429 - -
Sto13g2531 738 PANTHER 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE 107 633 - -
Sto13g2531 738 TIGRFAM ribA: GTP cyclohydrolase II 435 621 IPR000926 GO:0003935|GO:0009231
Sto13g2531 738 SMART FANCL_C_2 676 729 - -
Sto13g2531 738 CDD GTP_cyclohydro2 429 621 IPR000926 GO:0003935|GO:0009231
Sto13g2531 738 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 245 422 IPR000422 GO:0008686|GO:0009231
Sto13g2531 738 SUPERFAMILY RING/U-box 674 729 - -
Sto13g2531 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 731 IPR013083 -
Sto13g2531 738 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 245 423 IPR000422 GO:0008686|GO:0009231
Sto13g2531 738 Hamap GTP cyclohydrolase-2 [ribA]. 428 624 IPR000926 GO:0003935|GO:0009231
Sto13g2531 738 ProSiteProfiles Zinc finger RING-type profile. 680 722 IPR001841 -
Sto13g2531 738 Pfam Ring finger domain 679 722 IPR001841 -
Sto13g2531 738 SUPERFAMILY YrdC/RibB 208 426 IPR017945 -
Sto13g2531 738 SUPERFAMILY RibA-like 428 599 IPR036144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2531 Sto-Chr13 31460752 31469155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2531 635 731 C3H Transcription Factor Family AT4G33565 59.048 2.27e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2531 K14652 - vvi:100248717 823.928