Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2529 ATGGACGGCGGCGAAGACATCACCGATCCAAGTTACTGGGAAAAGCCTATGGCGAGTTTCCTCATACGCTATCACTCTGATCAGATCCGCTCCATTGCTTCCTCTCCAGATTCCAATCTCCATTACCCTCTCTTCGTCGATTTCGCAGAGCTGATGGAGGATGATCCTCACCTTGCCCGCCGCATCTTTACGGAACCCGCTGCATATTTACCCATATTCGACCAGGCTGCTGTTTGGGCTCATAAAATCATATTGGAAGATTCGGGAGCAAACAAGAATGGGGTTGAGAAAAAATGCATTCATGTCCGCATTAATACGAGTGGCTCACCGCTTGAATGCCCTGGGCGTGTTAGAGTGAAGCACCGGGGAATTCTCCTAACTCTTAAAGGGACAGTAATCAGGTCAGGAGCAATAAAGATGCATGAAGGAGAGAGGGAGTACAAGTGCCTAAAGTGCAAGAAGAGCTTCCTAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATAACACTACCTTCAATTTGCCAAGTTCGGGGATCTAAACCTTGTGAAGGCACAAAATTCCAGTATGTAGATAATACTATAGTatgtcatgattatcaagaaataAAAATCCAAGAAAGTACACAGGTTCTTGGTGTTGGAGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGACATCATTAAAGCTGGAGATGATGTAATTGTCACTGGTGTGTTAACTGCAAAATGGTCTTCAGAATTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACCATGTAAGGAGAACAAATGAATTGAAGTCCGAAATTGATATTCCTGATGATATTGTTATGAAATTCAAACAGTTCTGGGTCCACTTTAAAGATTCCCCTTTAAAAGGGAGGAATGCCATTTTGCGGGGAATTTGCCCACAAGTATTTGGACTCTTCACTGTCAAGTTGGCAGTTGCGTTAACGCTTATTGGAGGTGTGCAACATGTCCATACTTCTGGAACTAAGGTGCGAGGGGAGCCCCACTTACTTTTGGTGGGTGATCCTGGCACCGGAAAATCTCAGTTTTTGAAATTTGCTGCAAAATTGAGCAATAGATCTGTAATTACCACCGGTTTGGGAAGCACAAGCGCAGGATTAACTGTTACTGCAGTGAAGGATGGAGgtGAATGGATGTTGGAAGCTGGAGCCCTTGTTCTGGCAGATGGCGGGTTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACCATACATGAAGCCATGGAGCAGCAGACCATAAGTGTTGCCAAGGCTGGTCTTGTAACAACTCTCAGCACTAGAACAACAGTATTTGGTGCTACCAATCCTAAGGGACATTATGATCCTGATCAACGTATCACTACACTAGCTCTATCTGTCAACACAACACTCTCTGGTCCTCTATTAAGCAGATTTGATATAGTTCTTGTGCTCTTGGATACAAGGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTCAGTGAGGCGGAACCAGATAGAACTGGGCAACATGAAGATCTAGAAAATATCTGGCCACTTCCTACGCTCAAGAGGTATATTCAGTACGTGAAAGAAACCTTCAGACCAGTCCTTTCAAGAGACGCTGAGCTAGTTATCTCCAGTTATTATCAACTCCAAAGGAAATCTGGAACTCATAATGCAGCTAGGACAACTGTTCGCATGTTGGAAAGTTTGGTACGCCTTGCTCAAGCTCATGCAAGGATGATGTTCAGAAATGAGGTGACTCGATTAGATGCCATCACTGCCATTTTATGCGTAGAATCCTCAATGACTACCTCAGCTATAGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACCGAAAACCCCGATCAGGAATGTATCCTTGCTGGCTTTCTTTGCATAATGTAG 1950 0.4349 MDGGEDITDPSYWEKPMASFLIRYHSDQIRSIASSPDSNLHYPLFVDFAELMEDDPHLARRIFTEPAAYLPIFDQAAVWAHKIILEDSGANKNGVEKKCIHVRINTSGSPLECPGRVRVKHRGILLTLKGTVIRSGAIKMHEGEREYKCLKCKKSFLVYPEVEARNSITLPSICQVRGSKPCEGTKFQYVDNTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDIIKAGDDVIVTGVLTAKWSSELKDVRCDLDPVLIANHVRRTNELKSEIDIPDDIVMKFKQFWVHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVHTSGTKVRGEPHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQRITTLALSVNTTLSGPLLSRFDIVLVLLDTRNPEWDAVVSSHILSEAEPDRTGQHEDLENIWPLPTLKRYIQYVKETFRPVLSRDAELVISSYYQLQRKSGTHNAARTTVRMLESLVRLAQAHARMMFRNEVTRLDAITAILCVESSMTTSAIVDCIGNALHSNFTENPDQECILAGFLCIM 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2529 649 ProSiteProfiles MCM family domain profile. 302 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 Gene3D - 290 620 IPR027417 -
Sto13g2529 649 PRINTS Mini-chromosome maintenance (MCM) protein family signature 343 358 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 PRINTS Mini-chromosome maintenance (MCM) protein family signature 401 415 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 442 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 PRINTS Mini-chromosome maintenance (MCM) protein family signature 484 492 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 Gene3D - 16 106 - -
Sto13g2529 649 Pfam MCM AAA-lid domain 533 614 IPR041562 -
Sto13g2529 649 PANTHER DNA HELICASE MCM9 38 642 - -
Sto13g2529 649 SMART AAA_5 344 498 IPR003593 -
Sto13g2529 649 Pfam MCM OB domain 117 245 IPR033762 -
Sto13g2529 649 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 38 642 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 SUPERFAMILY Nucleic acid-binding proteins 41 253 IPR012340 -
Sto13g2529 649 Pfam MCM P-loop domain 304 512 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 Gene3D - 117 246 IPR012340 -
Sto13g2529 649 Gene3D - 141 197 - -
Sto13g2529 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 624 IPR027417 -
Sto13g2529 649 SMART mcm 117 616 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sto13g2529 649 CDD MCM9 305 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2529 Sto-Chr13 31442996 31450968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2529 5 642 Core DNA Replication Machinery Family AT2G14050 74.343 0.0 993
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2529 K10738 - gmx:100776255 1071.61