Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2518 ATGGAAAACGACGACGTCGATATGCAGGCCGCAGACACCAACGAAGCAGATTTGGATGACATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTAGAGAAGGAGATGAGCTCCGTGCAAGATCCTGCAACTGCTGCTGCAAGTCAGGCCAATAGAGAGGAAGTAGATTCTCGATCTGTCTTTGTAGGCAATGTGATGCTCCCATCTACAAGTTTTCTGGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACGGTGAACAGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTGGAATTCCTTGAAACAGAGGCTGTTCAAGAGGCCCTTCTTCTGAATGAATCTGAACTACATGGTCGCCAATTGAAGGTAACTGCCAAGAGGACCAACATACCAGGGATGAAGCAGTATCGTGGCCGCCGCCCCAATCCTTACATGGGGTTTCGAGGCAGAACTCCATATCCTCCTCCTTTTGCCTATTCTCCATATGGATATGGGAAGGTCGCAAGGTTCAGAATGCCAACAATGCGTTACAGCCCCTACTATTGA 621 0.4831 MENDDVDMQAADTNEADLDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPATAAASQANREEVDSRSVFVGNVMLPSTSFLVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRGRRPNPYMGFRGRTPYPPPFAYSPYGYGKVARFRMPTMRYSPYY 206
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2518 206 MobiDBLite consensus disorder prediction 1 24 - -
Sto13g2518 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 147 IPR000504 GO:0003723
Sto13g2518 206 SUPERFAMILY RNA-binding domain, RBD 59 175 IPR035979 GO:0003676
Sto13g2518 206 Coils Coil 11 45 - -
Sto13g2518 206 MobiDBLite consensus disorder prediction 42 64 - -
Sto13g2518 206 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 7 202 - -
Sto13g2518 206 Gene3D - 1 159 IPR012677 -
Sto13g2518 206 CDD RRM_II_PABPs 69 149 - -
Sto13g2518 206 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 7 202 - -
Sto13g2518 206 SMART rrm1_1 69 149 IPR000504 GO:0003723
Sto13g2518 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 153 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sto13g2518 Sto-Chr13 31382585 31386865 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2518 84 148 Eukaryotic Initiation Factors Gene Family AT2G36660 31.818 6.23e-06 44.3
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2518 13 31382585 31386865 Sto13g2518 13 31382585 31386865 CCT
Sto13g2518 13 31382585 31386865 Sto13g2518 13 31382585 31386865 ECH