Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2490 ATGTCTCACTTCGGAAGGTCTGGTCCCCCGGACATCACTGATACCTACTCTCTTCTTGTGCTCAACATCACATTCCGTACAACCGCCGACGACCTGTTTCCGCTTTTTGATAAGTATGGTAAGGTCGTCGACATCTTCATCCCCAGAGATCGAAGGACTGGTGAATCAAGGGGGTTTGCATTTGTGCGATATAAGTATGCTGATGAGGCACAAAAGGCAGTGGATAGACTGGACGGAAGAGTAGTTGACGGCCGGGAAATAACTGTTCAGTTTGCAAAGTATGGGCCTAATGCTGAGAGGATGTAA 306 0.4804 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERM 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2490 101 Gene3D - 4 100 IPR012677 -
Sto13g2490 101 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Sto13g2490 101 SMART rrm2_1 17 90 IPR003954 GO:0003676
Sto13g2490 101 SMART rrm1_1 17 90 IPR000504 GO:0003723
Sto13g2490 101 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 99 - -
Sto13g2490 101 SUPERFAMILY RNA-binding domain, RBD 9 96 IPR035979 GO:0003676
Sto13g2490 101 PANTHER OS08G0486200 PROTEIN 1 99 - -
Sto13g2490 101 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2490 Sto-Chr13 31164794 31165745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2490 13 96 Eukaryotic Initiation Factors Gene Family AT3G11400 34.524 2.47e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2490 K12891 - cit:102613407 204.912