Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2467 ATGAATCAGTTGCTTATGCATGGTTATGACGCTCATGGGTTCTTTTCTCTTTTGTGCAATTTTAGTGCTTGGTTTGGTGCTGAAGGTGATGCCCTAGCTGCATTGAAGAACAGCGTGACTGATCCTAATAATGTTCTTCAAAGCTGGGATTCTACCCTTGTCAACCCCTGTACATGGTTTCATGTAACATGCAGCCCCGATAATAGTGTGACGCGTGTTGATCTTGGAAATGCCAACCTTTCGGGTCCACTAGTTCCACAGCTTGGTCAGCTCCCAAATTTGCAGTACTTGGAACTTTACAGTAATAATATAAGTGGGAAAATCCCCGACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTATTTGAACAACTTAAATGGTCCAATACCGGACACATTGGGCAACCTTAAAAAACTACGGTTCCTGCGTCTCAACAACAACAGCTTGTCAGGAGGCATTCCCATGTCTTTGACAAATGTTGCTTCACTGCAAGTCCTTGATCTTTCAAACAACCAGCTAGAAGGAGAAATCCCAGTCAATGGCTCATTTTCCTTGTTTACTCCCATCAGTTATCAAAATAATCCTAGATTAATACAAAAATCTGTTCCAGCTCCACCGATTTCTCCAACACCGTCAGCTCCTTCAGGTAACAGTGCTACAGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTTCTTTTTGCAGCCCCTGCAATTGCGCTTGCTTATTGCCGGAAAAGGAAACCAGAGGATTATTTCTTTGATGTTCCTGccgaggaggatcctgaagttCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAGCTGCAAGTTGCAACAGACAACTTTAGTAACAAAAACATTCTGGGTAGAGGTGGATTTGGTAAAGTTTACAAAGGACGATTAACTGATGGTTCTTTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACACAGGGTGGAGAGCTGCAATTTCAAACAGAAGTTGAAATGATCAGCTTAGCTGTTCATCGTAATTTGCTTCGACTGCGTGGCTTTTGCATGACACCAACTGAACGGTTGTTAGTGTATCCTTTCATGGCCAACGGTAGTGTGGCATCATGTTTACGAGAGCGTCCTGAATCACTACCCCCTCTTGAATGGCCTGTACGGAAGCGTATTGCACTGGGATCGGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGATCCAAAGATTATTCACCGTGATGTCAAAGCTGCTAATATATTGTTGGATGAGGAATATGAAGCAGTTGTTGGAGACTTTGGTTTAGCAAAACTTATGAATTACAAAGATACTCATGTTACCACTGCTGTGCGTGGTACAATTGGGCACATAGCACCAGAATACCTCTCTACTGGAAAGTCTTCAGAGAAGACTGATGTCTTTGGATATGGTGTCATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCACGACTTGCCAATGATGATGATGTCATGTTACTTGATTGGGTAAAAGGACTTCTGAAAGACAAGAAGTTGGAAACACTAGTGGATGCTGATTTACAGGGTAATTATAATGAAGAGGAGGTAGAGCAATTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCCATGGAAAGACCAAAGATGTCTGAGGTGGTAAGGATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGATCAATGGCAAAAAGAGGAGACGTTCAGGCTAGAACACAACCACTCCCTTCACCCCACTGCTAATTGGATTGAAGACTCTAGTTCACATATCCCTCCAGATGAACTGTCAGGTCCTAGATGA 1836 0.4292 MNQLLMHGYDAHGFFSLLCNFSAWFGAEGDALAALKNSVTDPNNVLQSWDSTLVNPCTWFHVTCSPDNSVTRVDLGNANLSGPLVPQLGQLPNLQYLELYSNNISGKIPDELGNLTNLVSLDLYLNNLNGPIPDTLGNLKKLRFLRLNNNSLSGGIPMSLTNVASLQVLDLSNNQLEGEIPVNGSFSLFTPISYQNNPRLIQKSVPAPPISPTPSAPSGNSATGAIAGGVAAGAALLFAAPAIALAYCRKRKPEDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDNFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERPESLPPLEWPVRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNEEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDQWQKEETFRLEHNHSLHPTANWIEDSSSHIPPDELSGPR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2467 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Sto13g2467 611 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515
Sto13g2467 611 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515
Sto13g2467 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Sto13g2467 611 PANTHER BNAA08G11770D PROTEIN 26 611 IPR031048 GO:0004675|GO:0005102|GO:0006468
Sto13g2467 611 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2467 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Sto13g2467 611 SUPERFAMILY Protein kinase-like (PK-like) 268 563 IPR011009 -
Sto13g2467 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Sto13g2467 611 SUPERFAMILY L domain-like 28 192 - -
Sto13g2467 611 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Sto13g2467 611 ProSiteProfiles Protein kinase domain profile. 288 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2467 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 26 611 - -
Sto13g2467 611 Pfam Protein kinase domain 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2467 611 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2467 Sto-Chr13 31006063 31011161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2467 27 611 Receptor kinase-like Gene Family AT4G33430 77.673 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sto13g2467 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2467 K13416 - gmx:100800522 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2467 13 31006063 31011161 Sto13g2467 13 31006063 31011161 CCT
Sto13g2467 13 31006063 31011161 Sto13g2467 13 31006063 31011161 ECH