Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2462 ATGggagataataataataagaatgtGAAGCTTCCACCTGGGTTTAGATTCTACCCCACAGATGAAGAGCTTCTTGTTCATTTCCTTCGTAGAAAGGCCTCACTCCTGCCTTGCCACCCAGATGTTATCCCTGACCTTGACCTCTATCCTTATGACCCATGGGATCTTCATGCCAAAGCTCTGGCTGAGGGCAACCAATGGTACTACTATAGCAGGAGGACACAGAATAGGGTGACTGAGAATGGCTACTGGATGCCAATGGGAATGGAAGAGGCTGTAATTGGAGGAGGAGGAAGCAACACAAAAGTTATTGGAATGAAGAAATACTTTGTCTTCTATTTGGGAGATGGTGTCAAGACCAATTGGCTAATGCAAGAGTATCGTCTCTCTGATTCTGCTTCCACCTCTGCcaaatcatcatcttcctccaaAACAAAATCTCACCCAAAACCAGATCGCAGTAAATGGGTGATTTGTCGAGTTTACGAATGCGACGAAGACAACgatagtggtggtggtggtggtgacggAACAGAGCTGTCCTGTTTGGATGAAGTGTTCTTGTCATTGGATGATCTCGAAGAAATAAGCTTGCCAAATTAA 603 0.398 MGDNNNKNVKLPPGFRFYPTDEELLVHFLRRKASLLPCHPDVIPDLDLYPYDPWDLHAKALAEGNQWYYYSRRTQNRVTENGYWMPMGMEEAVIGGGGSNTKVIGMKKYFVFYLGDGVKTNWLMQEYRLSDSASTSAKSSSSSKTKSHPKPDRSKWVICRVYECDEDNDSGGGGGDGTELSCLDEVFLSLDDLEEISLPN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2462 200 Pfam No apical meristem (NAM) protein 12 129 IPR003441 GO:0003677|GO:0006355
Sto13g2462 200 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Sto13g2462 200 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 8 197 - -
Sto13g2462 200 SUPERFAMILY NAC domain 9 162 IPR036093 GO:0003677|GO:0006355
Sto13g2462 200 PANTHER NAC TRANSCRIPTION FACTOR 56 8 197 - -
Sto13g2462 200 ProSiteProfiles NAC domain profile. 11 164 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2462 Sto-Chr13 30971727 30972414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2462 11 163 NAC Transcription Factor Family AT3G04070 43.636 1.03e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto13g2462 NAM 3.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2462 - - gmx:100788893 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2462 13 30971727 30972414 Sto13g2462 13 30971727 30972414 CCT
Sto13g2462 13 30971727 30972414 Sto13g2462 13 30971727 30972414 ECH