Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2440 ATGTCATTCCGAAGTATAGTTCGTGATGTAAGAGATAGCTTAGGGAGCCTATCCAGACGGAGTTTTGATGTCCGATTGAGTGGCCATCACAGAGGTAAATCTCAATGCTCAGTACATGACCAGACCCTAGTGATTCAAAATAGTTGCTGGGCTAGCTTGCCCCCAGAATTGCTATATGATATCATTAAAAGGCTAGAGGAGAGTGAGAGTTCTTGGCCTTCTCGAAAGCATGTTGTCGCATGTGCTGCTGTTTGCCAGTCCTGGAGGACTATGTGCAAGGAAATTGTCAAGAATCCAGAGTTTAGTGGCAAGCTTACCTTCCCTGTGTCCTTGAAGCAGCCAGGATCACGAGATGGACCCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATATCACCTATTCCTTTGTCTCAGCCCTTttattattgCAGCTTTGATAGTTGAATATGGAAAATTCCTCCTTTCTGCTAAAAGGACACGAAGAACGACTTACACAGAGTATGTTATATCCATGGATGCTGACAACATCTCTAGATCAAGTAGCACTTACATTGGAAAGCTGAGGTCGAACTTTCTTGGTACCAAATTTATAATATACGATACGCAGCCTCCATGTACTTCTGCCCATATACCCCCTCCCGGGAGGACAAGCCGAAGGTTTTCCAAAAAGGTCTCACCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAAGTAACTTATGAATTAAATGTGCTTGGTACACGAGGCCCAAGGAGGATGCACTGCATTATGCACTCAATACCAGCCTCAGCACTTGATGCGGGGGGCACGGTCCCTGGCCAACCAGAGCTTCTTCCTCGGCCCCTGGAGGACTCATTCCGCAGCATCACATTTTCAAAATCATTAGATCACTCTATCGAGTTCAGCAGTTCAAGATTTTCTGACATTGGGGGATCCTGCAATGACGATGAAGATGGCAAGATGAGGCCCTTGGTGCTGAAAAATAAACCTCCAAGATGGCACGAGCAATTGCAATGTTGGTGCCTTAATTTCCGGGGACGTGTGACAGTTGCATCGGTTAAAAACTTCCAGCTGATTGCTGCTACCCAGCCAGCAGCCGGTGCCCCCACACCGTCTCAGCCAGCGCCGCCAGAGCAAGATAAGATAATTCTGCAGTTTGGGAAAGTTGGGAAAGATATGTTCACCATGGATTATAGGTATCCTCTTTCGGCATTCCAGGCTTTTGCTATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1278 0.4546 MSFRSIVRDVRDSLGSLSRRSFDVRLSGHHRGKSQCSVHDQTLVIQNSCWASLPPELLYDIIKRLEESESSWPSRKHVVACAAVCQSWRTMCKEIVKNPEFSGKLTFPVSLKQPGSRDGPIQCFIKRDKSNLTYHLFLCLSPFIIAALIVEYGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCTSAHIPPPGRTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCIMHSIPASALDAGGTVPGQPELLPRPLEDSFRSITFSKSLDHSIEFSSSRFSDIGGSCNDDEDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2440 425 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Sto13g2440 425 Gene3D Tubby Protein; Chain A 109 419 IPR025659 -
Sto13g2440 425 PANTHER TUBBY-RELATED 1 425 - -
Sto13g2440 425 Pfam Tub family 111 420 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Sto13g2440 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Sto13g2440 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Sto13g2440 425 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 425 - -
Sto13g2440 425 SUPERFAMILY Tubby C-terminal domain-like 99 425 IPR025659 -
Sto13g2440 425 Pfam F-box domain 50 98 IPR001810 GO:0005515
Sto13g2440 425 Gene3D - 45 98 - -
Sto13g2440 425 SUPERFAMILY F-box domain 46 93 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2440 Sto-Chr13 30796011 30798389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2440 1 425 TUB Transcription Factor Family AT1G76900 68.817 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto13g2440 Tub 3.8e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2440 K19600 - gmx:100814578 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2440 13 30796011 30798389 Sto13g2440 13 30796011 30798389 ECH