Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2428 ATGGCTGCGGTTGGTGTTGGAAGCAGTCATGAGAATGGAGAAGAGAAACAGACTGAACTAGCCTCGATGGTGTCTCAAATTATCAAACAGGAGATGGGAAAATATCTCAAAGAGAAGGAGACAGAGGAACACACCAATTTTGCTAGCCTTGTGAATTTCGCAGGTAATGCACAAAGTGGTAATTTCCTATCTCTAAATCATGGCTCTTGGATTTTAGATACAGGAGCTTCATCTCATATTTGCTCCAATATTAATTTGATGCAACATACCACTTCCCTTAGACCACCCATTCATGTGCATCTTCCTGATTCCACAACTAAAATTGTCCATACTAAAGGCCAAGCTGCATTACATCTTAAACTGATTTTACATAATGTTCTGCTAATTCCTAGTTTCAACTATAATTTGCTCTCTGTGAACAAACTTGTAAAGGAGACAGACCTACATTTAATATTCCATAAATGCTACTGCATTTTGCAGGACCGGAAGAGTGAGGAAATCATAGCAATTGCTGGGGTTAGAAGGAATCTTTACATTTTAGAGTCTAGGTCATTTGATCCATCTGTAATAAAGCATTATGTAACTCATTATGGCTTGTCGCCAAAAATTTATTGTAATGTTGTTTCCACTTCTAATGAAAAGCTCTTTGTTACTTGGCATCAAAGACTAGGACATTGTCCATTAACAGTGCTTAATCACATAAGTTCCTTAAAAAAACCAGAATTAAAAGAACTTCCAGTATGTGATGCTTGTCATCTTGCTAAGCAAAATAGACTCCCATTTCCATCTAGTCAATCAAAAGCTCAAGAAGCCTTAGAACTCTTACACATTGATGTATGGGGTCCATATGCCACACCTAGCTTGACTTCTGCTCATTATGTTCTGACTATAGTTGATGACTATAGTAGAGTCACTTGTACTCATTTATTCAAATTCAAAAGCCAAGTTCCAAATATTCTAGATACTTTCTTAAAACAGGTTCAGAAACAGTATGCTAAAACTGTTAAATTCATTCGTACTGACAATGGTCAGAAGGCATACAAAGCCTATGATTTAGAAACACATAAAATACATGTTAGCAGAGACATTCATTTTTATGAATCAGTTTTCCCTTTTGATAAACTCTGTGACAATGAGCCTAATACACTCTCACCTACTCCCATTTTATTTGATTGTCCAGATAGTGAGTTTATGCCCTCCACTTCCAATACAAATGAAACTTCCAGTATACCTATCTCACCCAGAACTGCCTTAAATCCTTTAGAGACTGAATCAGATGGAAACCATATGCCTGACCTTGATTCCCCTTCTACATCAGTCCATACACCATCTACATCATCCACTCATGATTCTTCTATAATGCCCATAGAACCTGACCAAACAGAAATCCCTCAGCTACCAGCCAACAGATTCAGTACTAGAACCAGAAAGGCACCAGCTTGGCTAACTGATTATGAATGCAATTTTACTTACCATACACCATGCATTACCTCAAGTGATATTCTTTCGGCAATTTCTACTGCACGTGCTTTGACCTTTGGTGATAATGCATCATGCATTGCCGATGATAGTACATGTGCAGCTTCCTGGACACCCCTTTCATCATTTTTATCAGGAAGCAAATGGTTTCTACTTAGCGGTTCAGCAGAAAGAACTGGTGGTGATGAAACCGAGCAGTACTTGACATGCTTTTCAGCCAGCAAAAGCTTCAGCAATGGCCTGCAGACAAGAACAATGCAGATACTAGCAAATTTAACTTTCATGGCCAAACTAGAAAAGAAAATGCTCAAGAGCACAGCAGTACCAGACTTATGTATAGctactcCACTATGGCGCAATGGACCCCCAGAGAAGCCAGTTCTGTGCAACGCATGTGGATCAAGGTTCAGGTTATGGGCAACCTTAGACAACTATACCCCCAGGCATGCCCAGCTTCATGACTCTCCCACTGACCATGAAACTATCAACACCACCAACACCACACCCACtactaataacattaataataatgatagccCCAAACATCATTTCACCTTAGATTCTATAATATCTCCTCAAGGTACGCAAGTTGAATCCAAGTTTATGGAATTGTTCAGCGGTGCCTTCGAAGAAAAGGACGACGGTGGTGCACAAGAAGTTGACGCCCATGCAGAAGTTCAAGAGGCAGATGGCGAGTTGGTGGAAGCAAGAGAtcaggaagaagaaagaagaagaagaagaagaggttctGATAATGCATAA 2241 0.386 MAAVGVGSSHENGEEKQTELASMVSQIIKQEMGKYLKEKETEEHTNFASLVNFAGNAQSGNFLSLNHGSWILDTGASSHICSNINLMQHTTSLRPPIHVHLPDSTTKIVHTKGQAALHLKLILHNVLLIPSFNYNLLSVNKLVKETDLHLIFHKCYCILQDRKSEEIIAIAGVRRNLYILESRSFDPSVIKHYVTHYGLSPKIYCNVVSTSNEKLFVTWHQRLGHCPLTVLNHISSLKKPELKELPVCDACHLAKQNRLPFPSSQSKAQEALELLHIDVWGPYATPSLTSAHYVLTIVDDYSRVTCTHLFKFKSQVPNILDTFLKQVQKQYAKTVKFIRTDNGQKAYKAYDLETHKIHVSRDIHFYESVFPFDKLCDNEPNTLSPTPILFDCPDSEFMPSTSNTNETSSIPISPRTALNPLETESDGNHMPDLDSPSTSVHTPSTSSTHDSSIMPIEPDQTEIPQLPANRFSTRTRKAPAWLTDYECNFTYHTPCITSSDILSAISTARALTFGDNASCIADDSTCAASWTPLSSFLSGSKWFLLSGSAERTGGDETEQYLTCFSASKSFSNGLQTRTMQILANLTFMAKLEKKMLKSTAVPDLCIATPLWRNGPPEKPVLCNACGSRFRLWATLDNYTPRHAQLHDSPTDHETINTTNTTPTTNNINNNDSPKHHFTLDSIISPQGTQVESKFMELFSGAFEEKDDGGAQEVDAHAEVQEADGELVEARDQEEERRRRRRGSDNA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2428 746 MobiDBLite consensus disorder prediction 703 746 - -
Sto13g2428 746 MobiDBLite consensus disorder prediction 643 671 - -
Sto13g2428 746 MobiDBLite consensus disorder prediction 1 20 - -
Sto13g2428 746 PANTHER GAG-POL-RELATED RETROTRANSPOSON 206 344 - -
Sto13g2428 746 PANTHER - 206 344 - -
Sto13g2428 746 MobiDBLite consensus disorder prediction 400 423 - -
Sto13g2428 746 CDD ZnF_GATA 608 631 IPR000679 GO:0006355|GO:0043565
Sto13g2428 746 Pfam GAG-pre-integrase domain 176 256 IPR025724 -
Sto13g2428 746 Pfam GATA zinc finger 607 631 IPR000679 GO:0006355|GO:0043565
Sto13g2428 746 SUPERFAMILY Ribonuclease H-like 267 343 IPR012337 -
Sto13g2428 746 Coils Coil 719 739 - -
Sto13g2428 746 Gene3D - 263 362 IPR036397 GO:0003676
Sto13g2428 746 MobiDBLite consensus disorder prediction 400 466 - -
Sto13g2428 746 Gene3D - 604 673 IPR013088 GO:0006355|GO:0008270
Sto13g2428 746 MobiDBLite consensus disorder prediction 430 455 - -
Sto13g2428 746 MobiDBLite consensus disorder prediction 650 671 - -
Sto13g2428 746 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 606 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2428 Sto-Chr13 30670855 30688146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2428 608 652 C2C2-Gata Transcription Factor Family AT4G17570 71.739 2.97e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto13g2428 gag_pre-integrs 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2428 - - nnu:104599359 268.085