Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2399 ATGCTGTGGGATTTGGACATTTCAGAGGAAAGTAAGTACCCAATACTTGATTCAAACCTTCATGATGTGGAATTCAATGGTCATTTACTGGATAATATGATGTCCAAATATCTCCAAAACGATTTTACacaactcattcccatcaacaCCTCACAGCCTCCTCCTCAGAACCCACTTCATCAAGAGCTGGTTAATGTTGAAAACAAAACTCAAGAGGGGTCGGGCGTAATAGCAGCGGCGACAAACACAACCGCCGCAGAAAGTGGtctgaaaaataagagaaagaggAAGGCAGAAGGCGTTGGCAAGTGCACACATTTCAAGTGCCAAGCAACTGAAACGCCCTTATGGAGGGGGGGCCCACTTGGTCCAAAGAATCAAAACACTGAGGTGCCCAATAATAGCCATATGGAATTCCAAGGGTTGAGGAAAGTTGATGATGTAAGAAGTGAAAACCAACATTTTGACTTGAATCTGATGCCAGAaagtgatgatgataataatgagCCTTTCATCATTTCACAACCTCATCATGATCACAATCTCACTCCTCAAGTTCAAGAAGTGAGCATAACTTCAAGTGGTTTGCCTATTGTGTTGAATTCTGATGATGGAAACCCTACTCCTTTCAACTCCCAAATCAACACAAGTTCAACAATGGAAGAGGTGCACACCACACCCTTCAACTCCTCTAATGATAGGGGAAGAGTTCATAGCTATGGCAGCTCTTCCATCATCGGCGGTCCAGGAAAGACTTTCCGCCGCCGCCACCGCCGGTCGGAAGTGAACTACGAGGATGTCTCCCGGCGAATTTGCACAAATTTCAGTTGTCGCACCAAAAACACTCCAATGTGGCGCAAGGGGCCTCTAGGTCCAAAGACACTGTGCAATGCCTGCGGAATTCAGTATAAGAAGCAGGTGACAAGAAGAGGAAGCAACCTGTGA 945 0.4307 MLWDLDISEESKYPILDSNLHDVEFNGHLLDNMMSKYLQNDFTQLIPINTSQPPPQNPLHQELVNVENKTQEGSGVIAAATNTTAAESGLKNKRKRKAEGVGKCTHFKCQATETPLWRGGPLGPKNQNTEVPNNSHMEFQGLRKVDDVRSENQHFDLNLMPESDDDNNEPFIISQPHHDHNLTPQVQEVSITSSGLPIVLNSDDGNPTPFNSQINTSSTMEEVHTTPFNSSNDRGRVHSYGSSSIIGGPGKTFRRRHRRSEVNYEDVSRRICTNFSCRTKNTPMWRKGPLGPKTLCNACGIQYKKQVTRRGSNL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2399 314 ProSiteProfiles GATA-type zinc finger domain profile. 276 314 IPR000679 GO:0006355|GO:0043565
Sto13g2399 314 MobiDBLite consensus disorder prediction 115 134 - -
Sto13g2399 314 PANTHER GATA TRANSCRIPTION FACTOR 76 126 - -
Sto13g2399 314 PANTHER GATA TRANSCRIPTION FACTOR 259 309 - -
Sto13g2399 314 SMART GATA_3 98 140 IPR000679 GO:0006355|GO:0043565
Sto13g2399 314 SMART GATA_3 268 313 IPR000679 GO:0006355|GO:0043565
Sto13g2399 314 CDD ZnF_GATA 271 314 IPR000679 GO:0006355|GO:0043565
Sto13g2399 314 PANTHER GATA TRANSCRIPTION FACTOR 17-RELATED 76 126 - -
Sto13g2399 314 PANTHER GATA TRANSCRIPTION FACTOR 17-RELATED 259 309 - -
Sto13g2399 314 MobiDBLite consensus disorder prediction 224 239 - -
Sto13g2399 314 Pfam GATA zinc finger 276 306 IPR000679 GO:0006355|GO:0043565
Sto13g2399 314 Gene3D - 267 313 IPR013088 GO:0006355|GO:0008270
Sto13g2399 314 MobiDBLite consensus disorder prediction 224 257 - -
Sto13g2399 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 269 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2399 Sto-Chr13 30460656 30469523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2399 272 311 C2C2-Gata Transcription Factor Family AT3G20750 62.500 4.75e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto13g2399 GATA 3.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2399 - - rcu:8267540 87.8113