Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2375 TTGCGATCTACGAACCGTGATCCGGTCCATTCCGGTTCGGGAAGTCCCGAAGTAGCAGAAGCAAGCAAGCAAGCCGACTGCCGACATGATTTCTGGGAGGGATCTTTCTCTGGAACTCGGAACTTCaaaggcttcttctcctttctttttctctttctcaatGGCTTCATAGATTCTCTGACATTGCTCGGAGGTAACAGAGGCAGAGGGATGGAGACTCAGTTCAATCACAGTCTATTCGAGAGGCGCCCCTTCGTTCGTTCCAAGACTCCCGCCGTTAAATGGGTTAAAGAATGGGTTCCACAAGATGTTGTAGCAACTGGAGGAAAATGCATGCTCTTAAGATGGGTAACAGAGGCTACCGCAAAGGCCTTGAAAGAGACCGATAAAAGCACTTCAATGCCCAACCCAGAACCAGAACCAACTACTGAAGTACTTTTTCTCTGCAGCTATGAAGGCTGTGGAAAGACTTTTATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGCTTGTCACTATGAAGGATGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAAAGACATTATCTCATTCATACAGGAGAGAGGGATTTTGTTTGTCCTCACGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTAAGGTCTCACATGAAAACACATTCGCAAGAGAACTATCATATCTGCCCATATCCGGATTGTGGAAAGAGATATGCTCATGAATACAAGCTGAAGAATCACATTGCATCTCATCATGAGAAGAATGCAGCAATGGAGGTGGGCCAGGTGGCGAAGTATACACCACCATCAGAGAAGCCTACGAAAACTGCGAAACCTTCTGGAGGGGCTTATGGTTCTGCATCATCTGATCGCCCTTATGCATGTCCTTATGAAGGGTGTGAAAAAGCTTATATCCATGAATACAAGCTTAAACTGCATTTGAAGAGGGAGCATCCTGGACATACATCTGATGAAAATGCAGAGAATGCTGCTCAGGCTAACGCGGAGAATGAAATGGATGAAGGAAGCGACCAAGAGGCTGCTTATGTTGGGAAAAGGTCAAATGGGAAAAGTCAGAAACAAAGTAAGCCAAAACTAAACTTGAAGTTGCCTCCTTCGAAAATTGCTCAACGCAAAGGCTCAACACCTTCAGCTCCTTTGAATGCAATTAAAAAGCCTTGGCCAGTGAAAGATGAAACTTTTGAGGAAGAAGATAGCGAAGAAACAGAAGAGGATCGTGAAAATGTGGAAGATGATAAGTTGGTTGGAATTTGGAAAAGACAAGGGCCTCTGCTGTTATGTGCTGATGTTGCCTACTTGTTTACATTGCGCTATCACTCTGTGACCGGCAATGGCATATTGCCAGACCTTGTGAATGAGATTTCTCGCGTGCTCAGTGATCACCGAGATCCCCACCATGATTTAGAACACTCTCTCCATCCATTTTCAACCCAGATATCCACAAATTTGGTTGAACAGGTCTTGAAGAGGTGCAAGAATCTTGGCTTCTCAGCTCATAGATTCTTTCTTTGGGCTAAGTCCATTCCAGATTTTCAACCCACTATGGAGAGCTACTGCATTTTGGTGGAAATCTTGGGAGCAAATAAGCAATTTGCTATACTATGGGATTTTCTCATAGAAATCAGAGACTCCCATTGTTGTGAAATTAAAAGCGAAATTTTTTGGCTCATCTTCAGGGCATATAGCCATGCTAATTTGCCAGGTGGTGCAATACGGGCTTTCATTAGAATGGATGAGTTTGGAGTTAAGCCAAATATTTACGATCTTGATAagcttttgtttgttttatgcAAGAAGAAGCACGTCAAGCATGCTCAACAATTTTTTGATCAAGCTAAGAGTAGTTTCAAGGTAAATGCTAAGACTTACAGCATTTTGATAGGAGGATGGGGTGAAATTGGTGATTCGAAGAAGGCCCGTGAGTTGTTTGATGAAATGCTCGTGGAAGGATGTTCAGTGGATCTGCTTGCTTATAATAATTTGTTAGCGGCCCTTTGCAAAGGAGGCAATGTTGATGAAGCTACCAATCTGTTTAAAGATATGTTATCAAATAGAGTTGAGCCAGATGCTTTTACTTATTCAATATTCATTCGTACATATTGTGATATGAATGATATGCATTCAGCATTCAGGGTTCTTGATAGAGTAAAAAGATATAACCTCTTGCTAAATGTGTTTACatacaattatattattaagagACTTTGTAAGAATGAGAAGGTGGAAGAAGCTTATCAATTGTTGGATGAAATGATATCAATGGGAGCCAAACCAGATACTTGGTGTTATAATGCAATACTAGCTTACCATTGTGATCACTGTGAGGTCAATAGGGCTCTTAGGTTGATGTCCAGAATGGAGAAAGATAACTGTCTTCTTGATCGTCATACATATAATATGGTGCTCAAATTGTTGATAAGGATAGGAAGGTTTGATAGAGCAACTGAAGTTTGGGAGAAGATGGCGGACAGGCAATTTTATCCTTCTGTTTCAACATATGCTGTCATGGTTCATGGTTTATTGAAGAAGAAGGGTAAGCTAGAGGAGGCCTGTAAGTATTTTGagatgatgattgatgaaggaATACCACCTTATGTTACTACCATTGAGTTGCTGAGGAATAGGCTTTTGGGGTTGGGGCTTTTGGATCACATTGAAATACTTACTGATAAAATGAGAAGGAGCACTTCTTGCTCGATCCAAGAGTTAGCACATGTCATGACGGGCACTAGGGCTCAAAATAATTCCAGACGTGATCTCACAGACACTGAAAGTGACTGA 2829 0.4076 LRSTNRDPVHSGSGSPEVAEASKQADCRHDFWEGSFSGTRNFKGFFSFLFLFLNGFIDSLTLLGGNRGRGMETQFNHSLFERRPFVRSKTPAVKWVKEWVPQDVVATGGKCMLLRWVTEATAKALKETDKSTSMPNPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFACHYEGCGKKFLDSSKLKRHYLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAMEVGQVAKYTPPSEKPTKTAKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHTSDENAENAAQANAENEMDEGSDQEAAYVGKRSNGKSQKQSKPKLNLKLPPSKIAQRKGSTPSAPLNAIKKPWPVKDETFEEEDSEETEEDRENVEDDKLVGIWKRQGPLLLCADVAYLFTLRYHSVTGNGILPDLVNEISRVLSDHRDPHHDLEHSLHPFSTQISTNLVEQVLKRCKNLGFSAHRFFLWAKSIPDFQPTMESYCILVEILGANKQFAILWDFLIEIRDSHCCEIKSEIFWLIFRAYSHANLPGGAIRAFIRMDEFGVKPNIYDLDKLLFVLCKKKHVKHAQQFFDQAKSSFKVNAKTYSILIGGWGEIGDSKKARELFDEMLVEGCSVDLLAYNNLLAALCKGGNVDEATNLFKDMLSNRVEPDAFTYSIFIRTYCDMNDMHSAFRVLDRVKRYNLLLNVFTYNYIIKRLCKNEKVEEAYQLLDEMISMGAKPDTWCYNAILAYHCDHCEVNRALRLMSRMEKDNCLLDRHTYNMVLKLLIRIGRFDRATEVWEKMADRQFYPSVSTYAVMVHGLLKKKGKLEEACKYFEMMIDEGIPPYVTTIELLRNRLLGLGLLDHIEILTDKMRRSTSCSIQELAHVMTGTRAQNNSRRDLTDTESD 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2375 942 Gene3D Classic Zinc Finger 204 231 - -
Sto13g2375 942 Gene3D Classic Zinc Finger 147 172 - -
Sto13g2375 942 SUPERFAMILY HCP-like 611 880 - -
Sto13g2375 942 SUPERFAMILY beta-beta-alpha zinc fingers 191 233 IPR036236 -
Sto13g2375 942 ProSitePatterns Zinc finger C2H2 type domain signature. 304 327 IPR013087 -
Sto13g2375 942 ProSitePatterns Zinc finger C2H2 type domain signature. 149 171 IPR013087 -
Sto13g2375 942 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 458 939 - -
Sto13g2375 942 Gene3D Tetratricopeptide repeat domain 627 699 IPR011990 GO:0005515
Sto13g2375 942 Gene3D Tetratricopeptide repeat domain 700 772 IPR011990 GO:0005515
Sto13g2375 942 SUPERFAMILY beta-beta-alpha zinc fingers 222 262 IPR036236 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 848 880 IPR002885 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 742 776 IPR002885 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 638 670 IPR002885 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 778 810 IPR002885 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 673 706 IPR002885 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 707 740 IPR002885 -
Sto13g2375 942 TIGRFAM PPR: pentatricopeptide repeat domain 812 845 IPR002885 -
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Sto13g2375 942 Gene3D Classic Zinc Finger 233 265 - -
Sto13g2375 942 Gene3D Classic Zinc Finger 173 203 - -
Sto13g2375 942 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 176 IPR013087 -
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Sto13g2375 942 MobiDBLite consensus disorder prediction 328 425 - -
Sto13g2375 942 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 332 IPR013087 -
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Sto13g2375 942 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 458 939 - -
Sto13g2375 942 Gene3D Tetratricopeptide repeat domain 785 940 IPR011990 GO:0005515
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 845 880 IPR002885 -
Sto13g2375 942 ProSitePatterns Zinc finger C2H2 type domain signature. 238 261 IPR013087 -
Sto13g2375 942 ProSitePatterns Zinc finger C2H2 type domain signature. 178 200 IPR013087 -
Sto13g2375 942 Pfam PPR repeat family 671 717 IPR002885 -
Sto13g2375 942 Pfam PPR repeat family 810 857 IPR002885 -
Sto13g2375 942 Pfam PPR repeat family 740 779 IPR002885 -
Sto13g2375 942 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 235 IPR013087 -
Sto13g2375 942 ProSitePatterns Zinc finger C2H2 type domain signature. 208 230 IPR013087 -
Sto13g2375 942 Gene3D Tetratricopeptide repeat domain 465 616 IPR011990 GO:0005515
Sto13g2375 942 SUPERFAMILY beta-beta-alpha zinc fingers 150 200 IPR036236 -
Sto13g2375 942 Gene3D Classic Zinc Finger 276 346 - -
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 810 844 IPR002885 -
Sto13g2375 942 Pfam PPR repeat 638 667 IPR002885 -
Sto13g2375 942 SMART c2h2final6 302 327 IPR013087 -
Sto13g2375 942 SMART c2h2final6 236 260 IPR013087 -
Sto13g2375 942 SMART c2h2final6 176 200 IPR013087 -
Sto13g2375 942 SMART c2h2final6 206 230 IPR013087 -
Sto13g2375 942 SMART c2h2final6 147 171 IPR013087 -
Sto13g2375 942 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 265 IPR013087 -
Sto13g2375 942 Pfam Zinc finger, C2H2 type 206 230 IPR013087 -
Sto13g2375 942 MobiDBLite consensus disorder prediction 409 424 - -
Sto13g2375 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Sto13g2375 942 MobiDBLite consensus disorder prediction 361 375 - -
Sto13g2375 942 MobiDBLite consensus disorder prediction 275 300 - -
Sto13g2375 942 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 205 IPR013087 -
Sto13g2375 942 SUPERFAMILY beta-beta-alpha zinc fingers 297 325 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2375 Sto-Chr13 30250427 30257874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2375 80 406 C2H2 Transcription Factor Family AT4G06634 63.018 1.43e-132 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g2375 PPR_2 2.7e-09 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2375 - - gmx:100794364 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2375 13 30250427 30257874 Sto13g2375 13 30250427 30257874 ECH