Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2367 ATGGCTTCCCATTCTGGCTCCTCCAACCCTATCCACTTCTTCAAGATCATCCTCAAATCTAGTCTTCAAAGCATTAGGATTCCAAACAAATTTACAGGGAGATACGGGGGTGGTTTGCCAAATCCAGTGTTTCTCAAGCCTCCTGATGGTAAAGAATGGAGAATTTATTGGACAAAACATGACAATGGGTTCTGGCTTCAGAATGGGTGGGAGGAATTTGCTAGTTTTTACTCTCTGAATATGGGGCATTTGGTTTTGTTCAAATATGAAGGAACTTCTCAGTTTGTTGTGCACATATTTGACCAGAGTGCCACAGAAATAGAATATCCTTCTCATGACACTTTGGGCCAAAAGGACAACCTTACTAAGATCAGTGATGAAAATATAGTTGAAGTCTTGGACGACATGCCTTCAAGTAAAAAGGTTGGACCCAAAGTGCCAAGGTCATCTCCTCGACCTCATAAGAAAATGAGAACTGCCACACATGAAGATGTTGAGAAGAGAACCTCCAATCTGCAGAATTTCCATGTGGGTGTCAAATCTAGAAGTGGACAACCTCAAGGAACAGAGTCTCAGAAGTCAACCAATGAAGAATTGAAGGCTTGTAAGCAAGAATCGGAAGAAGACATGGGAGGAAGAACTTTAACCAAGAATAAATGCCTGAATTGGGAGGATGAAAGAAGGATGGATTCATTAACTGCTTTGAAAAAGACCAGAGCTTCAAAGAGAGCTAGAACTTTCAGATCTCAAAATCCCTCTTTCAGGGTAGTCATGCGGCCATCGTATGTCAATTACAGATTTCGCTTGCATCTGCCACTGGAATTTTTCAAAACATATCTTCAGAAAAAAAACAATACTGCGCGTGTCAAACTTCTGGTAGAAGATGGAGTTTGGTCTGTTCGGTACATGTCCAGAAGAGCCGGTAAACAATACGTTTTAGAGCTTCATTATGGATGGAAGAAATTTGTTGAGGATAATGACTTGAAAGTAGGTGATGTTTGTCTCTTTGAGCTCATTCAGAGAACCAAACCTACAACATTGCAAGTGACAATTTTTCGGGCCTCTAAAGGGTCAGTTCATTCAAATGACTCAGATCCAGGAAATGGAGAAAAAGGAGTTAAACTTGAGGGCTTTTTGGATCAAGGTGGGAAGCCAACCCAAAGCACTTCACTGCTGTCCAGGCCCCAGGAGTCTAGAACTCTGGCTGAAGCCGGAAGGTTCAGTTCAAAGAATCCCTTTTTCACTATCCATATAAGGGCTGGCCATCTGTATGTACCTAAGAGCTTCCACAGATACATTAAGAAGACGAATGTGATAATGATACAAATGGAGAAGACTTCATGGCCTGTGAATATTGTATTTTATGCAGACTCTACACGCTCAGAATCAGCCAGATTCTCTGGTGGCTGGTTCTCATTTGCAAGAGAAAGTGGGCTGCAAGTTGGAGACATTTGTATCTTTGAATTGATAGAAAGAGGAAAAGATCAAGTGCTGCAACTCCATGTTTTCAGAAGCCCCAGTAAGTAG 1527 0.4165 MASHSGSSNPIHFFKIILKSSLQSIRIPNKFTGRYGGGLPNPVFLKPPDGKEWRIYWTKHDNGFWLQNGWEEFASFYSLNMGHLVLFKYEGTSQFVVHIFDQSATEIEYPSHDTLGQKDNLTKISDENIVEVLDDMPSSKKVGPKVPRSSPRPHKKMRTATHEDVEKRTSNLQNFHVGVKSRSGQPQGTESQKSTNEELKACKQESEEDMGGRTLTKNKCLNWEDERRMDSLTALKKTRASKRARTFRSQNPSFRVVMRPSYVNYRFRLHLPLEFFKTYLQKKNNTARVKLLVEDGVWSVRYMSRRAGKQYVLELHYGWKKFVEDNDLKVGDVCLFELIQRTKPTTLQVTIFRASKGSVHSNDSDPGNGEKGVKLEGFLDQGGKPTQSTSLLSRPQESRTLAEAGRFSSKNPFFTIHIRAGHLYVPKSFHRYIKKTNVIMIQMEKTSWPVNIVFYADSTRSESARFSGGWFSFARESGLQVGDICIFELIERGKDQVLQLHVFRSPSK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2367 508 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 354 - -
Sto13g2367 508 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 395 504 - -
Sto13g2367 508 SUPERFAMILY DNA-binding pseudobarrel domain 407 504 IPR015300 -
Sto13g2367 508 SMART B3_2 413 506 IPR003340 GO:0003677
Sto13g2367 508 SMART B3_2 13 103 IPR003340 GO:0003677
Sto13g2367 508 SMART B3_2 254 355 IPR003340 GO:0003677
Sto13g2367 508 Gene3D - 6 104 IPR015300 -
Sto13g2367 508 MobiDBLite consensus disorder prediction 137 213 - -
Sto13g2367 508 MobiDBLite consensus disorder prediction 156 170 - -
Sto13g2367 508 CDD B3_DNA 252 353 IPR003340 GO:0003677
Sto13g2367 508 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Sto13g2367 508 MobiDBLite consensus disorder prediction 196 213 - -
Sto13g2367 508 CDD B3_DNA 412 504 IPR003340 GO:0003677
Sto13g2367 508 PANTHER B3 DOMAIN-CONTAINING 6 354 - -
Sto13g2367 508 PANTHER B3 DOMAIN-CONTAINING 395 504 - -
Sto13g2367 508 Gene3D - 232 356 IPR015300 -
Sto13g2367 508 Gene3D - 392 506 IPR015300 -
Sto13g2367 508 ProSiteProfiles B3 DNA-binding domain profile. 408 506 IPR003340 GO:0003677
Sto13g2367 508 MobiDBLite consensus disorder prediction 357 379 - -
Sto13g2367 508 MobiDBLite consensus disorder prediction 171 195 - -
Sto13g2367 508 ProSiteProfiles B3 DNA-binding domain profile. 254 355 IPR003340 GO:0003677
Sto13g2367 508 Pfam B3 DNA binding domain 254 354 IPR003340 GO:0003677
Sto13g2367 508 Pfam B3 DNA binding domain 420 505 IPR003340 GO:0003677
Sto13g2367 508 Pfam B3 DNA binding domain 14 102 IPR003340 GO:0003677
Sto13g2367 508 SUPERFAMILY DNA-binding pseudobarrel domain 249 355 IPR015300 -
Sto13g2367 508 CDD B3_DNA 12 101 IPR003340 GO:0003677
Sto13g2367 508 SUPERFAMILY DNA-binding pseudobarrel domain 8 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2367 Sto-Chr13 30187480 30190958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2367 396 504 B3 DNA Binding Superfamily AT3G18990 32.479 4.08e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto13g2367 B3 1.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2367 - - ccaj:109794243 332.413