Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2353 ATGGCAACGCAGCTTCCGGACCACTTCAAGTGTCCGATTTCCTTAGAGATAATGTCCGACCCGGTTATCCTTTCATCGGGTCACACATTTGACCGGGTCTCCATCCAACGCTGGCTCGACGCCGGTCACCGGATTTGTCCAATTACCAAATTGCCCCTCCCCGACTGCCCCTCCCTCATCCCCAACCATGCCCTCCGAAGCTTGATTTCCAACTACGCTCTCATTTCGCCTCTCAAGCAGCAGCCTCCTCCgcagcccgaaaccctaatctccATGCTCACCTCTCGCTCTTCTCCGCGGGGCTCTAAAATTGAGTTGCTCGAACAGCTCACTCGCCTCTCCAAGCGTGACTCGGTCTTCCGACGGCGGTTGACTGAGTCAGGGGTGGTGTCGGCGGTGCTCAACTGCTTTGATTCCGGTGATTCTGGTCTGCAGGAGAAAGCCCTGTCCTTGCTGTTGAATCTGAGTCTTGACGATGATAACAAGGTGGGTTTGGTGGCGGAGGGCGCGATTGGTCGAGTTGTCGCAGTTCTGCTGGGTGGCACCCCGGATTGCAGAGCGATGGCTGCAACTATGCTGACGAGCTTGGCGGTTGTGGAAGTAAATAAAGCCACAATTGGTGCGAATGGTAAagggagagagaagaaggaagCGGCCACAGCGCTTTATGCCATCTGTTCTTTTCctgacaatcgaaggagagctATAGAATGTGGCGCGGTGCCAATTTTGCTGAGAACCGTTGATTCCGGGCTTGAAAGGGCAGTTGAAGTTCTGGGTATTCTGGCCAAGTGTAAGGAAGGTAGAGAGCAAATGGAAAGCTATAATGGATGTATACAGATTCTAGCCCGGGTTTTGAGGAATGGAAGCTCGAGGGGAATCCAATATGCACTTTTGGCATTGAACTCCCTTTGTTGTAGTAgtgaaaaaatgtgtttagaggcTACAAAAGGAGGAGTTTTAGAGATGTGTCTTGCATTGCTGGATGATGATAATGAAAAAATAAGGAGAAACTCGTCCAGTTTGATTCAGGTTATGCGTGGCAACCAGGGGATGAGTTAA 1062 0.4727 MATQLPDHFKCPISLEIMSDPVILSSGHTFDRVSIQRWLDAGHRICPITKLPLPDCPSLIPNHALRSLISNYALISPLKQQPPPQPETLISMLTSRSSPRGSKIELLEQLTRLSKRDSVFRRRLTESGVVSAVLNCFDSGDSGLQEKALSLLLNLSLDDDNKVGLVAEGAIGRVVAVLLGGTPDCRAMAATMLTSLAVVEVNKATIGANGKGREKKEAATALYAICSFPDNRRRAIECGAVPILLRTVDSGLERAVEVLGILAKCKEGREQMESYNGCIQILARVLRNGSSRGIQYALLALNSLCCSSEKMCLEATKGGVLEMCLALLDDDNEKIRRNSSSLIQVMRGNQGMS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2353 353 Gene3D - 83 209 IPR011989 -
Sto13g2353 353 SMART arm_5 117 157 IPR000225 GO:0005515
Sto13g2353 353 SMART arm_5 158 198 IPR000225 GO:0005515
Sto13g2353 353 SMART arm_5 265 306 IPR000225 GO:0005515
Sto13g2353 353 SMART arm_5 228 264 IPR000225 GO:0005515
Sto13g2353 353 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Sto13g2353 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Sto13g2353 353 PANTHER U BOX DOMAIN-CONTAINING 1 347 - -
Sto13g2353 353 Gene3D - 210 350 IPR011989 -
Sto13g2353 353 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 347 - -
Sto13g2353 353 SUPERFAMILY ARM repeat 87 346 IPR016024 -
Sto13g2353 353 SUPERFAMILY RING/U-box 3 74 - -
Sto13g2353 353 CDD RING-Ubox_PUB 9 50 IPR045210 -
Sto13g2353 353 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Sto13g2353 353 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2353 Sto-Chr13 30046205 30047305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2353 1 348 U-box Gene Family AT4G21350 58.919 1.76e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2353 - - zju:107421885 518.464