Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2344 ATGGGTGAGGAGGAAGCTTTGCCGGACCATCTGCGGTGCAAGCGCACCGACGGGCGGCAATGGCGTTGCAGCCGGAGAGTGATGGATAACGTGAAGCTGTGTGAGATTCACTATCTGCAAGGCCGCCATCGGCAGTACAGGGAGAAGGTCCCGGAATCGCTAAAGCTTCAGAGAAAGCGGAAGAAAGGGCTTAATAAGAACGACTCTGTTCTCAACAATGTTGATGTGAAGGCACGGAAAGTGGGCAAAATGgcgaagatgatgaagaaaagGCTAAAAGTGTCAGATGATTCAGAAGCAACGGAAGCTCCTGTGAGGAAGAAGGTATCCAAGGAAGGTGATAAGAAGCTGGAGTTGATCAAGATGGTGCTGAAGAGAGAGGttgagaagaggaagaagaagaagaagcaaggagagaagaggaagaagcaaAAGGAGGAGTTCTTCTATTACAGCGAAGGAGAGTTAACAAAAGAATTGCCCAATGGCATAATGGCAATTTCTGGGGCACCAATGCCTCAAGAATACTGCAATGTAGGTTCTCATTGTGATGTTAAAGTATCTGATGATCATAAAGCAATTACTCCACGTTACTTCAGGTCCAAGAATGCTGAGAGGCTGCCCCTTGGAAAGTTACAGGTTGTGCCATATGGATCAAACTTGAGGAAGGGTAAGAGGAAGAAGTGCCATTGGTGCCAGAGAAGCGATTCTTGGAATCTCATCAAGTGTTCAAGCTGTCAAAAAGAGTTTTTCTGCATGGATTGCATTAAAGAACGATATTTTGATACTCAAAATGAAGTTAAGAAGGCTTGTCCAGTTTGTCGACGAACTTGTACCTGTAAAGACTGCTTGGCAAGTCAATGTAAAGACAATGAAATTGAGGAATTTTCAACTGGTAAGAACAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGTATGCTCCTTCCTGtactaaaacaaataaatgaaGACCAGAATGCTGAGATAGAAAGAGAAGCAAAAACTAGAGGTAAAAGACCCTCTGATATTCACATCAAGCAGGTTGACATTTGCGGCGACCAAAATTACTGCAATCACTGCAAAACACCAATTTTGGATCTCCATAGAAGCTGCCCTAGTTGTTCCTACTGCCTTTGTTTAAGTTGCTTGCAATTATGTCGAGAAAACACCTCTGGAAAAATCAACTCATCTGTGTTTGAGTTGAAAGCTGGTCTTACCAGTAAAAGCCATCTTTTGGATAAGGTTATTTTATGCCCACCCACAGATCTCGGTGGTTGTGGAGATAGCGCTCTTGAATTGAAATGTGTTTTCCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAAGCAGAAGAAATAGTTTGCAGCTATGACATTCCCGAAACTTCAGATAAAAGTTTGAGCAGCTGCTCACTATGTCTGGACATAGATCATAAAGTTGATGGATTCAAGCAGCTTAAAGAAGCAGCTCTAAGAGAAGATTCAAATGATAATTACATGTTTAATCCTACCCTTTTGGACATCAGTGATGAGAACTTTGAGCACTTTCAGAAGCACTGGGGAAAGGGCCATCCCTTAGTGGTGCGAGATGTGCTCCAAAGTACATCAAACCTCAGTTGGGATCCACTGGTCATGTTCTGTTCTTATCTTGAGAAGAGCATTGCAAGATATGAGAATGATAAGGATAAACTTGAAGCTTGTTTGGATTGGTTTGAGGTAGAAATTAACATTAGGCAGTTTTATACTGGCCCCCTTAAATGTCAACCATGGAAAAACACGTGGCATGAGATGCTGAAATTGAATGGGTGGTTGTCTTCCCAATTATTCAAAGAAGAGTTTCCAGCTCATTTTGCTGCAGTAATTGATGCACTACCACTTCAAGAATATATGAATCCCACATCTGGTATTCTGAATTTAGCTGTAAATTTGGCACAGGGAAGTAGAAAACATGAACTAGGGCCATATGTCCATCTTTCATATGCCTCTGGTGACGAACAAAGTGATTTTGCGACAAAACTCTGCTATGACTCATATGATGTGGTTAATATTATGGCACATGCCTCAGATATCCCTCTTCCTACAGAACAGCTGATTAAAATAAGGAAACTGCTGAAAAAGCTCAAAACTCTGTGTTGTACAAAGCCTTCCAAAATTACTGATGAGCAAGAAAAGGATCAGAGAGTGAAAGTTAATTCATTGTTACCTGCTGAAGACAATGAAGAAAAAATGCACTTTTTCAGGAGAGTTGATAGAACGGCTTGCATCTCTGTTGAAGCACAAAAAGCAGTTAATCAGAGTATAGGGAGCAAAATTTTCCTTGATGGAGAATGTGATTCTGATTCTGAACCCCCTTTACTTCAACATGGGACTGTTCAAAGCACTAATTTGCCTCCACATCATAATAATTGTAGAAATCCCTTTGAAAGCTCAAATAATGACAGAAATAAAACGTTTGTTGAACATTCTGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCGAAGCTCATAGAATACCTTAAGAGACACTCTGATGAATTTTCTCATACCCATGACTATCACAAAAAGATGGTCCATCCACTCTTAGATCAGTGCTTCTTTCTTGACAACACTCACAAAATGAAGCTCAAGGAGGAGTTTAAAATTGAACCATGGACGTTCGAGCAACATGTTGGTGAAGCCGTCTTAATTCCTGCTGGATGTCCATATCAGATTAGAAATTCTAAGTGCTGTGTTCATGTAGTATTGGAATTTGTGTCCCCAGAGAACGCTACTGAGTGTATCCAGTTGATTGATGAAGCCCGTCGGCTTCCACCAGACCATAAATCAAGAGTGGACCATCTTGATGTGAAGAAAATGGCCCTTGATAGCATGAATTCAGCAATAAAAGAAATACGTGAGCTTACCTGCAAAATGTGA 2925 0.3993 MGEEEALPDHLRCKRTDGRQWRCSRRVMDNVKLCEIHYLQGRHRQYREKVPESLKLQRKRKKGLNKNDSVLNNVDVKARKVGKMAKMMKKRLKVSDDSEATEAPVRKKVSKEGDKKLELIKMVLKREVEKRKKKKKQGEKRKKQKEEFFYYSEGELTKELPNGIMAISGAPMPQEYCNVGSHCDVKVSDDHKAITPRYFRSKNAERLPLGKLQVVPYGSNLRKGKRKKCHWCQRSDSWNLIKCSSCQKEFFCMDCIKERYFDTQNEVKKACPVCRRTCTCKDCLASQCKDNEIEEFSTGKNRVDRILHFHYLICMLLPVLKQINEDQNAEIEREAKTRGKRPSDIHIKQVDICGDQNYCNHCKTPILDLHRSCPSCSYCLCLSCLQLCRENTSGKINSSVFELKAGLTSKSHLLDKVILCPPTDLGGCGDSALELKCVFPLSWIKEMEVKAEEIVCSYDIPETSDKSLSSCSLCLDIDHKVDGFKQLKEAALREDSNDNYMFNPTLLDISDENFEHFQKHWGKGHPLVVRDVLQSTSNLSWDPLVMFCSYLEKSIARYENDKDKLEACLDWFEVEINIRQFYTGPLKCQPWKNTWHEMLKLNGWLSSQLFKEEFPAHFAAVIDALPLQEYMNPTSGILNLAVNLAQGSRKHELGPYVHLSYASGDEQSDFATKLCYDSYDVVNIMAHASDIPLPTEQLIKIRKLLKKLKTLCCTKPSKITDEQEKDQRVKVNSLLPAEDNEEKMHFFRRVDRTACISVEAQKAVNQSIGSKIFLDGECDSDSEPPLLQHGTVQSTNLPPHHNNCRNPFESSNNDRNKTFVEHSGAQWDVFRRQDVPKLIEYLKRHSDEFSHTHDYHKKMVHPLLDQCFFLDNTHKMKLKEEFKIEPWTFEQHVGEAVLIPAGCPYQIRNSKCCVHVVLEFVSPENATECIQLIDEARRLPPDHKSRVDHLDVKKMALDSMNSAIKEIRELTCKM 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2344 974 Pfam WRC 8 49 IPR014977 -
Sto13g2344 974 PANTHER PROTEIN B160 1 973 - -
Sto13g2344 974 CDD cupin_RmlC-like 841 909 - -
Sto13g2344 974 ProSiteProfiles JmjC domain profile. 633 937 IPR003347 -
Sto13g2344 974 Gene3D Cupin 499 782 - -
Sto13g2344 974 Gene3D Cupin 783 946 - -
Sto13g2344 974 ProSiteProfiles Zinc finger RING-type profile. 229 275 IPR001841 -
Sto13g2344 974 Coils Coil 126 146 - -
Sto13g2344 974 Pfam JmjC domain, hydroxylase 823 918 IPR003347 -
Sto13g2344 974 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 973 IPR045109 GO:0032454|GO:0033169
Sto13g2344 974 SUPERFAMILY Clavaminate synthase-like 511 960 - -
Sto13g2344 974 SMART cupin_9 614 937 IPR003347 -
Sto13g2344 974 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2344 Sto-Chr13 29963917 29969570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2344 8 44 GRF Transcription Factor Family AT2G22840 54.054 6.47e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto13g2344 JmjC 1.6e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2344 K15601 - gmx:100810673 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2344 13 29963917 29969570 Sto13g2344 13 29963917 29969570 CCT