Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2338 ATGGGTAGAGCACCGTGTTGCGACAAGAACGGGCTGAAGAAAGGGCCATGGACCCCCGAAGAAGACCAGAAACTCATGGACTATATTCACAAGCATGGGTACGGCAACTGGAGGACACTTCCTAAGAATGCTGGGTTAGAGAGGTGTGGAAAGAGCTGCCGTCTGCGGTGGACCAACTATCTGCGACCAGATATAAAGCGAGGTCGCTTCTCCTTCGAAGAGGAGGAGACTATCATTCAGCTTCATAGCATTCTCGGAAACAAGTGGTCGGCCATAGCGTCTCGATTGCCAGGCAGAACCGACAACGAGATCAAGAACTACTGGAACACTCACATCAGGAAAAGGCTTCTCCGCATGGGAATTGATCCTGTGACCCACACCCCACGCCTCGACCTCCTGGACCTCTCTTCCATTCTCTCCGGCATCCACATCAACAATCCTAATTCCCTCCTAAACCCCGACCTCCTCAAGCTCGCTTCCTCCCTCATCGCATCTCAACCACACGCCGCCTttgattcccaaattcaacaatTCAATAATATGCCCCAACCCCAACCCACTCATAATAATGTAGACCCTTACAATTCAAACCACTTCACTCAATTTAGTGATCTCATGGACCCTCATAGTAACTTCGGCTTGGCTTCGGTTCTATCTACgccttccaattccaattctacctACTTCAACGGTGGTGGGAGCAGCACGGAggacgagagagagagctaTAACAGCTCCACCCATCATAATATCTTCAACTTTGAAATCCCCAATAATGTTTTGCATGTTAATGACTTCATCATGTAA 807 0.456 MGRAPCCDKNGLKKGPWTPEEDQKLMDYIHKHGYGNWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLSSILSGIHINNPNSLLNPDLLKLASSLIASQPHAAFDSQIQQFNNMPQPQPTHNNVDPYNSNHFTQFSDLMDPHSNFGLASVLSTPSNSNSTYFNGGGSSTEDERESYNSSTHHNIFNFEIPNNVLHVNDFIM 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2338 268 Gene3D - 69 116 - -
Sto13g2338 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto13g2338 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto13g2338 268 CDD SANT 69 112 IPR001005 -
Sto13g2338 268 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sto13g2338 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto13g2338 268 CDD SANT 16 61 IPR001005 -
Sto13g2338 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto13g2338 268 SMART sant 13 63 IPR001005 -
Sto13g2338 268 SMART sant 66 114 IPR001005 -
Sto13g2338 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto13g2338 268 PANTHER TRANSCRIPTION FACTOR MYB41 1 191 - -
Sto13g2338 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 191 - -
Sto13g2338 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sto13g2338 268 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2338 Sto-Chr13 29936537 29937733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2338 1 246 MYB Transcription Factor Family AT4G21440 56.522 7.06e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g2338 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2338 K09422 - jre:108990588 325.865