Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2313 ATGGCGACTGTTGTCCCGTCTTCGTCGTCGTCAAAGGCCTGCTACAATTCAGACTGCAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTTCGTACTGGAGAGTTCGCCGAGCTTTGTGATCGATGCGGGATGGAGGTGGGAAGTCCCACTTCTGCCTCTTCCTTTTCCATCCTTAATAAAACTCCCAAACGTGGGTTCAAAGTGAAGAACAATCTTCAGAATGATATTTCTATCTTCAGGAAGAAAGTAGATAATGTCATTTCACACAATTCTGCTTTCGAAGAAGGACGATTCTGTGAAATTTTTCACTTGAATGCTTCTGGTTGGAGAACTTGTGAGACATGTGGGAAGGGGATTCATTGTGGGTGTATTGTTTCAAGTACTGCCTTTATGTTGTTGGATCCTGGAGGCATTGAATGCATTGCATGTGCcaggaaaaatattattttgCCATCGAACCTGCCTTGGCCACCATCTTTTTCTATTCAAAGTCGTTTAACTGAGAGACTTAGAGACCTATCCGGAAAGAATTGGAGTCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATACTGCATCTTCATCTGACAGGCACTCAGATGTGCCCTCTGTAGTTGAAATATCTAGTGTTGAGCATATTTACGGAAATGAAAGGTTACCTGCCTCATCTCTGGAAAAGAAAAACGATGATCTATCTGGAATATCACCTAATTGGAATGTTAAGCTTGGTGCACGAGAAATGATATTTATGAATGGAATGCGGAATGATGAAAAGTCAAGTTCATGCTTAAATATGTGCCAACAGCAATCTTCTCTAAAAGAAGATTCATCTACCCAACCATTTGGTTTGACTGTTCCTTATGCATCTTCGAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAATCACCCGCAACAAACTCCTCCACCTCCTCATGGAAAGCAATTTAGTGGCCCTGTTCATATTGCACTTGATTCATCAGGTGAAACACAGGTTCGAAATGGACGGCCCAGAGCGGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCAGGAGCTACAGCAAATATCTCTTGATTCTAATTCTGTAATAACTCCACTGTTCCAAAAAACGTTGAGTGCTAGTGATGCAGGGCGAATTGGGCGTCTGGTGCTACCAAAAAAATGTGCAGAGGTTAGACCTGAGGCTTACTTTCCACCAATTTCTCAACCTGAAGGGTTGCCACTTAAAATCCTCGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTTTGGCCCAATAATAACAGTCGAATGTATGTTTTAGAGGGTGTAACTCCCTGCATACAGTCCATGCAATTGCAAGCAGGTGACACTGTAACATTTAGTCGTTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTGCTACCCCATCTGATCAGGACAATGAAACAAATAAGACTGGAAATGGATATTCTACGCATGGTGAAGTTGAATTGGCAGATCCTAGTTCATGGTCTAAAGTTGACAAGTCAGGATATATAGCAAAAGAAGCACTGGGGAACAAATCTTCAATCTCtaggaaaagaaagagtagTGCCCTGGGTTCAAAGAGTAAGCGTCTAAGAATTGAAAATGAGGATCTAATAGAGCTAAATATTACATGGGAAGAAGCACAAGGCCTGCTCCGTCCCCCTCCTAATCTTGTTCCGAGCATTGTAGTGATTGAAGGTTTTGAATTTGAAGAATATGAGGATGCTCCAGTGCTTGGGAAACCAACAATTTTCACCACTGATGATGTTGGTGAAAAAATCCAGTGGGCTCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCTAGTGCCCTTCTTCCATCAAGGTGGACTTGTTCTGATAATCCATGGGACCCAGAAAGAAAAATAGATCAGCATTCCCAGATGAATACTAATGCCTTCACTCAGGCCATTCATATTGGATCTTGTTCAGCAGCGCAAGAGTTGACAGCAGAACAGCTCGAAGATTTGCTACCCCCTTGTAATTCAGTTGTATCAAAGAAAATGAAGTCCGCCAAGCAGGATCCTGATAATGTTGAAGCTTTGGAAGGACTTGACACCCTTGCAAACCTAGCTATCTTAGGAGAGGGGGAGGCACTCCCAGCGTCTGCCCAAGCCACGACCAAACACCCTCGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGCTTAACAGTGAAGCGCCGTTTCCGTACCTTGATGTTACGACGTGAGAAGAAACAATCAGAAAGAGAAGCAGAAACAACACGGAAAAAGCAACAGCCTCAGCTGCCTCAGCCACCACCACCTATGTCGGAGATATTGCTTGATGATGATTCCCTGCCTTGCAGTAACACAGGAGATAGTAGTAGTCCAAACCAGAACAGGGAAGGCAATGAAGGTTCTGATGATGACCCTAACAGGATAAAATCATCTGCCTCACCATTTAAAGGTCAAATCGACCTCAATATCCAGCCCGAGCGAGAGGAAGAGTTGTCACCTAGTTCAGATTCTGGGAGCATGATCAAGTTGCTCCATGATGCTACTGAGAGGTATCTCAGGCAGCAGAGTATGTCAAACTCTTTCCCCGGGGACACATCTGGTGGTCAGTCACAAAAAGTTGGAGAGGAAGCAAGGGAAGAGAAACTTTGCAACGGTGTGGTCCTTGGCAATAGTAATCATAGTGCTGATAAGGAACATGCCCAAACTTTGTCTATGAAAGTGTGA 2868 0.439 MATVVPSSSSSKACYNSDCKELKSDRPKKGWRLRTGEFAELCDRCGMEVGSPTSASSFSILNKTPKRGFKVKNNLQNDISIFRKKVDNVISHNSAFEEGRFCEIFHLNASGWRTCETCGKGIHCGCIVSSTAFMLLDPGGIECIACARKNIILPSNLPWPPSFSIQSRLTERLRDLSGKNWSQLAGSGPVPWKQAPSLFNTASSSDRHSDVPSVVEISSVEHIYGNERLPASSLEKKNDDLSGISPNWNVKLGAREMIFMNGMRNDEKSSSCLNMCQQQSSLKEDSSTQPFGLTVPYASSNERNGQIGVTGNHPQQTPPPPHGKQFSGPVHIALDSSGETQVRNGRPRADARGRNQLLPRYWPRCTDQELQQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEVRPEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATPSDQDNETNKTGNGYSTHGEVELADPSSWSKVDKSGYIAKEALGNKSSISRKRKSSALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNLVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDDVGEKIQWAQCEDCQKWRKLPASALLPSRWTCSDNPWDPERKIDQHSQMNTNAFTQAIHIGSCSAAQELTAEQLEDLLPPCNSVVSKKMKSAKQDPDNVEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPQLPQPPPPMSEILLDDDSLPCSNTGDSSSPNQNREGNEGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKLLHDATERYLRQQSMSNSFPGDTSGGQSQKVGEEAREEKLCNGVVLGNSNHSADKEHAQTLSMKV 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2313 955 MobiDBLite consensus disorder prediction 903 955 - -
Sto13g2313 955 MobiDBLite consensus disorder prediction 790 805 - -
Sto13g2313 955 MobiDBLite consensus disorder prediction 789 887 - -
Sto13g2313 955 ProSiteProfiles B3 DNA-binding domain profile. 385 490 IPR003340 GO:0003677
Sto13g2313 955 MobiDBLite consensus disorder prediction 490 509 - -
Sto13g2313 955 MobiDBLite consensus disorder prediction 829 844 - -
Sto13g2313 955 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 9 507 - -
Sto13g2313 955 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 501 886 - -
Sto13g2313 955 Gene3D - 612 667 - -
Sto13g2313 955 ProSiteProfiles Zinc finger CW-type profile. 617 686 IPR011124 GO:0008270
Sto13g2313 955 MobiDBLite consensus disorder prediction 277 331 - -
Sto13g2313 955 CDD B3_DNA 383 488 IPR003340 GO:0003677
Sto13g2313 955 MobiDBLite consensus disorder prediction 488 521 - -
Sto13g2313 955 Pfam B3 DNA binding domain 385 488 IPR003340 GO:0003677
Sto13g2313 955 Gene3D - 363 493 IPR015300 -
Sto13g2313 955 Pfam CW-type Zinc Finger 622 656 IPR011124 GO:0008270
Sto13g2313 955 SMART B3_2 385 490 IPR003340 GO:0003677
Sto13g2313 955 MobiDBLite consensus disorder prediction 903 920 - -
Sto13g2313 955 MobiDBLite consensus disorder prediction 277 313 - -
Sto13g2313 955 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 507 - -
Sto13g2313 955 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 501 886 - -
Sto13g2313 955 SUPERFAMILY DNA-binding pseudobarrel domain 382 489 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2313 Sto-Chr13 29766114 29777692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2313 10 794 B3 DNA Binding Superfamily AT4G32010 41.162 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto13g2313 B3 6.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2313 - - gmx:100807252 1470.29