Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2287 ATGGTTCAAAAGGAAACATCTAGTTTATACTGCACTGGAGGAATTCTTGCAGATGATCAGgggCTTGGAAAAACAGTGTCAACTATTGCTTTAATACTAAAAGAAAGACCTTCGACACTGATGGATTGCCACAGTGCGCAAAAGGGTGAATTAGAAACTTTGAATTTGGATGCGGATGATGATGTTCTCCCTGAGAGTGGTGGGGTTAAGAAAGAAACTAATATATGCCAGGATATATCAAGTGTATGTCCAATAAAAAACAAGAATTTGCTGATGCAAACAAAGGGAAGGCCATCTGCAGGGACACTCATTGTTTGTCCCACTAGTGTCCTACGGCAATGGGCTGAAGAGTTGCAAAACAAGGTAACCTCCAAAGCAAATCTTTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTCATGAGCTGGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGATGAGAAAGGAAATTCTGACATTCGTGCTGATCTACCGCTTAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAGTAAAGGTGGCAAGAAGGGATTAGACAGCGCATTGCTTGAGGCTGCTGCTCGTCCTCTAGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATTAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCAAAGCGCAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTTTACAGTTACTTCAGATTTCTAAGATATGATCCTTATGCTGTTTATACAACCTTCTGTTCTACAATTAAGATCCCAATCAGCAGAAATCCAAGCAAAGGGTATAGAAAGCTACAAGCCGTCTTAAAGACAATAATGTTACGCCGGACTAAAGGCACACTTCTTGATGGAGAACCTATTATTTCCTTGCCGCCTAAATTTGTAGAGCTGAAAAAGGTGGATTTTTCAGACGAGGAGCGTGATTTCTATTCCAGACTGGAGGCTGATTCTCGTGCACAGTTTCAGGAATACGCTAATGCTGGGACTGTCAAGCAAAATTATGTCAACATTTTGTTAATGCTCTTGCGCCTTCGACAAGCTTGTGATCACCCTCTGCTTGTTAAGCGCTACAATTCTAACTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTCGGGAGAAACAAGTATCACTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGCATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGCTTGTGGTCATGTTTTTTGTAACCAGTGcatttgtgaacatcttactgGTGATGACAATCAGTGCCCTGCCGCAAATTGCAAAGTTCGGCTGAGCATGTCTTCAGTATTTTCAAAGGACACATTGAGCTGTTCTCTTTCTGATCAGCCTAGTGATAGTTTGCTTGGTTGCTCTGGTTCTGAAGTGGAGGGATATGAGCCTTGTTCTCAGAGTCAGCCGTGTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTGTTGAATTCATTAACTAAACCGCAGGGTTGTGCGTCCAAAAATATTTCTATGCAGATCAATTCTGAGGAACACAGTGACCTGCATGGGAACTCCCCTGATGCCAGCAAGGAGAGTCAAAAACCATCCGGGGATGGAAGCTCTAATGACTCAATTGTTGTTAGAGAGAAAGCTATTGTGTTTTCTCAGTGGACGAGGATGTTAGATTTGCTTGAAGCATGTCTTAAGAATTCTTCTATTCAGTATAGGAGGCTTGATGGAACAATGTCGGTGGTTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTATCCCAGAGGTAACAGTTATGATTATGTCTCTGAAAGCTGCCAGTCTTGGTCTCAACATGGTAGCAGCCTGCCATGTACTTTTGCTTGACCTATGGTGGAATCCTACAACTGAAGATCAAGCGATAGACAGAGCGCATCGAATTGGGCAGACTCGCCCGGTAACTGTTTTGCGGTTAACTGTGAGAGATACGGTTGAAGATAGGATTTTAGCTCTACAGCAAAAGAAGCGAAAGATGGTTGCATCAGCATTTGGAGAAGATGGAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTTATGATGTGA 2214 0.4246 MVQKETSSLYCTGGILADDQGLGKTVSTIALILKERPSTLMDCHSAQKGELETLNLDADDDVLPESGGVKKETNICQDISSVCPIKNKNLLMQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSNRTKDPHELAKYDVVLTTYSIVSMEVPKQPLVDKDDDEKGNSDIRADLPLSKKRKCPPSSSKGGKKGLDSALLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTTFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSDEERDFYSRLEADSRAQFQEYANAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPREKQVSLLKCLEASLALCGICNDPPEDAVVSACGHVFCNQCICEHLTGDDNQCPAANCKVRLSMSSVFSKDTLSCSLSDQPSDSLLGCSGSEVEGYEPCSQSQPCDSSKIKAALEVLNSLTKPQGCASKNISMQINSEEHSDLHGNSPDASKESQKPSGDGSSNDSIVVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTIPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2287 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 314 IPR027417 -
Sto13g2287 737 MobiDBLite consensus disorder prediction 166 188 - -
Sto13g2287 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 736 IPR027417 -
Sto13g2287 737 MobiDBLite consensus disorder prediction 166 203 - -
Sto13g2287 737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 276 IPR014001 -
Sto13g2287 737 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 1 736 - -
Sto13g2287 737 Pfam Helicase conserved C-terminal domain 580 679 IPR001650 -
Sto13g2287 737 ProSiteProfiles Zinc finger RING-type profile. 430 469 IPR001841 -
Sto13g2287 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 481 IPR013083 -
Sto13g2287 737 Pfam SNF2-related domain 11 391 IPR000330 GO:0005524|GO:0140658
Sto13g2287 737 CDD SF2_C_SNF 582 689 - -
Sto13g2287 737 SMART ultradead3 2 291 IPR014001 -
Sto13g2287 737 Gene3D - 329 736 IPR027417 -
Sto13g2287 737 SMART helicmild6 596 679 IPR001650 -
Sto13g2287 737 Pfam Zinc finger, C3HC4 type (RING finger) 430 466 - -
Sto13g2287 737 ProSitePatterns Zinc finger RING-type signature. 445 454 IPR017907 -
Sto13g2287 737 MobiDBLite consensus disorder prediction 562 577 - -
Sto13g2287 737 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 736 - -
Sto13g2287 737 MobiDBLite consensus disorder prediction 550 577 - -
Sto13g2287 737 SMART ring_2 430 468 IPR001841 -
Sto13g2287 737 Gene3D - 3 51 IPR038718 -
Sto13g2287 737 Gene3D - 204 326 IPR038718 -
Sto13g2287 737 CDD DEXDc_SHPRH-like 3 314 - -
Sto13g2287 737 Gene3D - 76 171 IPR038718 -
Sto13g2287 737 SUPERFAMILY RING/U-box 427 479 - -
Sto13g2287 737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 575 732 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2287 Sto-Chr13 29574097 29577987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2287 1 736 RAD5 or RAD16-like Gene Family AT1G61140 65.282 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto13g2287 SNF2_N 2.4e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2287 - - gmx:100792901 1179.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2287 13 29574097 29577987 Sto13g2287 13 29574097 29577987 CCT
Sto13g2287 13 29574097 29577987 Sto13g2287 13 29574097 29577987 ECH