Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2283 ATGGCATGTGAGATCCAGAACACTGAGTCCCAAACAATGCAGTCTCCAGAAAGAAAACCCAGAGAGGTCTATGTGAAAGCTAAACCACCTGTTATTCTCAAGTTTGAAGATGTTTTGTACAAAACCAAAATCAGCAAAGGAGAAAGCTTGTGCTGCAAAAAGGCAAGTCTTGAAGAGAAACTGATTTTGAATGGGGTTAGTGGAACTGCTTCACCAGGAGAATTGCTAGCCATTTTAGGCCCTTCTGGAAGTGGCAAAACAACCCTTCTAACTGCATTAGGAGGTAGACTCAATGGTGCTATCACTAGTGGAAGCATAACCTACAATGACAAGCCCTTCTCAAAACAAGTGAAGCAAAACATGGGTTATGTGGCTCAGAATGATGTCTTCTACCCTCACCTCTCAGTCACCGAGACACTGGTTTTCACTGCGCTTCTTCGCTTGCCAAGTAGTCTCACCAAACAAGACAAAATCTCACATGTTCAGGCCATTATGAATGAGCTTGACCTGAACCATTGTAAGGACGCCATAATGGGAGGGCCACTTTTGAGAGGTGTTTCAGGTGGAGAATGGAAGAGGGTTAGCATAGGGCAAGAGCTTTTGACTAATCCAAGTCTATTGCTTGTTGATGAACCCACCTCAGGTCTTGATTCAACCACAGCTAGAAGAATTGTTTTAACCCTTTGTGAGTTAGCTAAAGGTGGAAGGACCATTGTGATGACTATTCATCAGCCTTCTAGCAAGCTTTTTTACTTGTTTCAGAAGGTTTTGCTGTTATCAGATGGTACTAGTCTTTATTTTGGAAAAGGAGAATATGTGATGAATTACTTCTCTAGCATTGGTTATGCTCCACCCTCAGCCATGAATCCTTCAGATTTCCTACTCGATCTTGCAAACGGTATATCTCCTGGGAATCCTAATGAGGATGCAAGAGCTGTAAAGCAAGCATTATTATCTGCTTTTGAGATTAACCTTAGCCAACAGGTGAAGGTGGAACTTCAGAGTTCCAGTGTTCAATTTCATGACAGTTCAGTAGATGACAGATTTAGCCAATGGTGCACAACTTGGTGGCAGCAGTTCACTATTTTACTAAAAAGAGGCTTCAAGGAAAGTAAATATGAGTACTTTTCAGCCCTCAAAATCTGCCAAATCTTGGCCATTTCGCTTATTTCAGGCATTTTCTGGTGGCATTCCAGGTTTCATGACATGCAAGATCAGGTAGGACTTTTATTCTTCTACACTCAATTCTGTGGATTCTTCTCAATGTCTAATGCCATCTTTACCTTTCCTCGCGATCACGGTATGGTCATAAAGGAAAGATCTTCGCGCATGTATAGGCTCTCCTCTTACTTCATGGCTAGTAATATTGTGGACCTCCCAATGCAACTATCCCTCCTAGCCCTATTTGTCACTATCACCTATTGGATGGGAGGGCTAAAAGCCAATGCTATAATCTTCATCCACACTCTAGCTGTAGTTCTTCTCTATGTGGTGGTAGCACAAGGTCTTGGGCTAGCTATTGGTGCACTGGTGAATAATGAGAGGGCTGCTGCTACAATGGGATCAGTTTTGATGACTCTATTTGTTCTTGCCAATGGCTTCTATGTTCAGCACATGccagtgtttatggtttggatgaGGTACATATCTCCTAGCTATTATTGCTTCAAGCTCTTGCTAGGGTCACAGTTCAAAAATAGTGACACTTACCCTTGTGGAGGACCTGGTGTGACCTGCCCAGTTTGGAACTATCCTATAATTAAGCTTGTAGGTCTTGGGAAGCAGGGTATCTCTGTTGTTGCTTTGATTTTGATGATTGTAGGTGAGAGCGATCAGATAGAAGGAAAGATGGATAGCACAGACTCATGTTCAGGGTGTCATCATCCACAGCTGCCACCGGGATTTCGGTTCCACCCCACCGATGAGGAGCTCGTCGTTCACTACCTCAAGCGAAAGGCTGCCTCCGCTCCTCTTCCCGTCGCCATCATCGCCGACGTCGATCTCTACAAATTCGACCCCTGGGAGCTCCCAAGTAAAGCAGCGTTTGGGGAGCAGGAGTGGTATTTCTTCAGCCCAAGAGAGCGCAAGTACCCAAATGGCGCGAGGCCAAACAGGGCCGCCACATCTGGGTACTGGAAGGCGACGGGAACCGACAAGCCAATTCTGTCGTCGGAGGGGCAGCAGCAGAAAGTGGGAGTGAAGAAAGCTCTGGTGTTCTACGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGACTCATCGACAACAACGCTATTTCTAATTCCTCTAAACCTCCTCTCTCTGCCTCTCACGCTCCCAAGAAAAACTCCTTAAGGCTTGACAATTGGGTGCTGTGTCGAATCTACAAGAAGAGCAATAGTAGTGGGATGAACAGTATCTTACAGAGGACGGCAGTACCATTGATGGAGCAGGAGAGTTCAATGGAGGCTATGCTTAATTCCAATCCAGCAATTGGAGTACTCGAAAACGTGAACGATGACAACTTGTTTGATGGATTGCTAGCAGGAGGAGTAGGGGATTACTCCAACTCCTCAAAGGGAACCGCTTTCCCCGCAATGAAACGACCCTTGCCATCGCCGTTTTGGAACGTGGACACAGGCTCTCCAATATCGGCCTCCTCTTCCTCAACCAAGAGATTCCATGCCCATCTCAATACCTCTGACCAAAACAACACTACTACTAATTCCTTTGTTTCTCTCCTCACTCATCATACCAGTACCGCACCCACATTTCATAATCCCAATAATGCCCTTCTCGGCTCTCTAGGGGATTCCGCAGTATTGAGGCACCAATTTCAACTCCCTACCCTCAATTGGAACTCCTAG 2865 0.4517 MACEIQNTESQTMQSPERKPREVYVKAKPPVILKFEDVLYKTKISKGESLCCKKASLEEKLILNGVSGTASPGELLAILGPSGSGKTTLLTALGGRLNGAITSGSITYNDKPFSKQVKQNMGYVAQNDVFYPHLSVTETLVFTALLRLPSSLTKQDKISHVQAIMNELDLNHCKDAIMGGPLLRGVSGGEWKRVSIGQELLTNPSLLLVDEPTSGLDSTTARRIVLTLCELAKGGRTIVMTIHQPSSKLFYLFQKVLLLSDGTSLYFGKGEYVMNYFSSIGYAPPSAMNPSDFLLDLANGISPGNPNEDARAVKQALLSAFEINLSQQVKVELQSSSVQFHDSSVDDRFSQWCTTWWQQFTILLKRGFKESKYEYFSALKICQILAISLISGIFWWHSRFHDMQDQVGLLFFYTQFCGFFSMSNAIFTFPRDHGMVIKERSSRMYRLSSYFMASNIVDLPMQLSLLALFVTITYWMGGLKANAIIFIHTLAVVLLYVVVAQGLGLAIGALVNNERAAATMGSVLMTLFVLANGFYVQHMPVFMVWMRYISPSYYCFKLLLGSQFKNSDTYPCGGPGVTCPVWNYPIIKLVGLGKQGISVVALILMIVGESDQIEGKMDSTDSCSGCHHPQLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWELPSKAAFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPILSSEGQQQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLIDNNAISNSSKPPLSASHAPKKNSLRLDNWVLCRIYKKSNSSGMNSILQRTAVPLMEQESSMEAMLNSNPAIGVLENVNDDNLFDGLLAGGVGDYSNSSKGTAFPAMKRPLPSPFWNVDTGSPISASSSSTKRFHAHLNTSDQNNTTTNSFVSLLTHHTSTAPTFHNPNNALLGSLGDSAVLRHQFQLPTLNWNS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2283 954 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 286 IPR003439 GO:0005524
Sto13g2283 954 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524
Sto13g2283 954 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 13 608 - -
Sto13g2283 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 281 IPR027417 -
Sto13g2283 954 Pfam ABC-2 type transporter 358 564 IPR013525 GO:0016020|GO:0140359
Sto13g2283 954 Gene3D - 52 280 IPR027417 -
Sto13g2283 954 Pfam ABC transporter 63 214 IPR003439 GO:0005524
Sto13g2283 954 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 608 - -
Sto13g2283 954 SMART AAA_5 72 263 IPR003593 -
Sto13g2283 954 MobiDBLite consensus disorder prediction 1 21 - -
Sto13g2283 954 Gene3D NAC domain 640 801 IPR036093 GO:0003677|GO:0006355
Sto13g2283 954 Pfam ABC-2 type transporter 243 340 IPR043926 GO:0140359
Sto13g2283 954 SUPERFAMILY NAC domain 627 797 IPR036093 GO:0003677|GO:0006355
Sto13g2283 954 Pfam No apical meristem (NAM) protein 632 759 IPR003441 GO:0003677|GO:0006355
Sto13g2283 954 ProSiteProfiles NAC domain profile. 631 797 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2283 Sto-Chr13 29516752 29524757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2283 621 954 NAC Transcription Factor Family AT1G61110 53.757 6.41e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto13g2283 ABC2_membrane 5.9e-36 CL0181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2283 K05681 - gmx:100800295 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2283 13 29516752 29524757 Sto13g2283 13 29516752 29524757 CCT