Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2235 ATGGCCTTTGAGCACTACTATTCCCAGGAATGGAAAAGCATTCCTAGTGCCATGACAGAGACTGAAAGTTGCAATGGTTGTTTCGATTGCAACATCTGCTTAGACTTTGCTCATGAACCTGTAGTCACCCTCTGTGGCCACCTCTACTGCTGGCCTTGCATATACAAATGGCTCCATGTCCAAAGTTCTTCACTTGCATCTGACGAGCACCCACAATGCCCAGTATGCAAGGCTGAAATATCTCACGCCACGATGGTACCCCTGTACGGCCGGGGGCAAGCCTCAGCTCAAAGCGAAGACAGGCGGGCATTGTGTCAGGACATTTTTATACCACCAAGGCCGCCTGCATTTGGTGCCCAAGCTTTGTTGCCAGCATCGTCATCATCTCATGGTGGTCATAATCTGCAACATTCTTATCGTTCTCCTCTGTACCAAGAAGAGGATGCCTCATTACAAATGCCCATTGGTGCCACCATCACGCCTCCCGGGCTCCACCACCCTTTGGCCGGGATGGTCGGAGAGATGGTTTATGCCAGAGTGTTTGGCAACTCGGAAAACGTATACTCCTACCCCAATTCTTATCACCCGATCGGAAGCAATAGCTTGAGACTGAGAAGGCAGGAGATGCAAGCAGACAAGTCATTGAACAGAATCTCAATTTTCCTCTTTTGTTGCTTTCTTTTGTGTCTCATTGTCTTCTGA 702 0.49 MAFEHYYSQEWKSIPSAMTETESCNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSSSLASDEHPQCPVCKAEISHATMVPLYGRGQASAQSEDRRALCQDIFIPPRPPAFGAQALLPASSSSHGGHNLQHSYRSPLYQEEDASLQMPIGATITPPGLHHPLAGMVGEMVYARVFGNSENVYSYPNSYHPIGSNSLRLRRQEMQADKSLNRISIFLFCCFLLCLIVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2235 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Sto13g2235 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto13g2235 233 CDD RING-HC_AtRMA_like 28 78 - -
Sto13g2235 233 SMART ring_2 30 76 IPR001841 -
Sto13g2235 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 90 IPR013083 -
Sto13g2235 233 SUPERFAMILY RING/U-box 26 89 - -
Sto13g2235 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 233 - -
Sto13g2235 233 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Sto13g2235 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2235 Sto-Chr13 29150037 29150771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2235 13 219 C3H Transcription Factor Family AT4G27470 43.891 1.94e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2235 K10666 - rcu:8275582 300.827