Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2223 ATGACAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGTACTGGAAAAACTCTTATGGCACGtcaaattggaaaaattttGAATGGAAAGGAACCAAAGATTGTCAATGGTCCTGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTCTTTGCTGATGCTGAACAGGATCAGAGGACTCTAGGCAAGGATATAGACACATTACATGTTTCTCTAAGGGATGAAAGTGAATTGCATGTCATAATTTTTGACGAGATTGATGCTATCTGTAAGTCAAGAGGTTCTACTCGAGATGGCACTGGAGTACATGACAGTATTGTGAACCAACTTCTTACCAAGATAGATGGTGTGGAGTCACTTAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTTGATGAAGCTCTTTTGAGACCAGGGCGACTGGAAGTCCAAGTTGAGATAAGTCTCCCTGATGAAAATGGCAGATTGCAGATTCTTCAGATTCATACAAACAAGATGAAGGATAATTCATTTCTAGCTCCTGATTTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAATTATAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCAGTCTCATTTGCTTTAAATAGACAACTGAGTCTAGATGATCTCACCAAACCAGTAGAGGAAGAGAACATCAAAGTTACAATGGATGATTTTTTGAATGCACTTCGAGAAGTTGTTCCTGCATTTGGAGCTTCCACTGATGACCTTGAAAGATGCAGacTTGGCGGCATGGTGGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCTATGTTGCTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTTGAAGGCTCTAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGCATTGACAGCGATTTCCCATACGTCAAGATCGTTTCAGCTGAAACAATGATTGGTCTACATGAAAGCACTAAATGTTCGCAGATTATCAAGGTTTTTGAGGATGCGTACAAGTCGCCATTGAGCGTCATTATTCTTGATGACATTGAAAGATTACTGGAGTATGTTGCCATTGGTCCACGGTTTTCAAACTTGATTTCTCAGACACTATTGGTCTTGCTAAAGCGGCTTCCTCCCAAGGGGAAGAAGCTCCTTGTTATTGGTACGACAAGTCAATTGATTTTCTTGGAGTCGATTGGATTTTGTGATACATTCTCAGTCAATTACCATGTTCCTACATTGAACGCGAATGATGTGAAGAAGGTTCTCCAACAGTTGAATGTTTTTGCTAAGGATGATGTTGATGCTGCTGCGGAGGCCTTGAATGATatgCCTATCAAGAAGCTATACACATTGATTGAGATGGCAGCCCAAGGGGAACAAGGTGGATCTGCAGAAGCAGTCTATTCTGGCAAAGAGAAGATTAATATCTCTCACTTCTATGATTGCCTCCAGGATGTCGtcagaatataa 1527 0.408 MTGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGKDIDTLHVSLRDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLAPDLNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALREVVPAFGASTDDLERCRLGGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCSQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSQLIFLESIGFCDTFSVNYHVPTLNANDVKKVLQQLNVFAKDDVDAAAEALNDMPIKKLYTLIEMAAQGEQGGSAEAVYSGKEKINISHFYDCLQDVVRI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2223 508 Pfam ATPase family associated with various cellular activities (AAA) 10 161 IPR003959 GO:0005524|GO:0016887
Sto13g2223 508 Pfam ATPase family associated with various cellular activities (AAA) 302 410 IPR003959 GO:0005524|GO:0016887
Sto13g2223 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 472 IPR027417 -
Sto13g2223 508 Pfam AAA+ lid domain 188 243 IPR041569 -
Sto13g2223 508 SMART AAA_5 297 418 IPR003593 -
Sto13g2223 508 SMART AAA_5 6 164 IPR003593 -
Sto13g2223 508 PANTHER VESICULAR-FUSION PROTEIN NSF 3 507 IPR039812 GO:0016887|GO:0035494
Sto13g2223 508 Gene3D - 163 250 - -
Sto13g2223 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 260 IPR027417 -
Sto13g2223 508 CDD AAA 8 162 - -
Sto13g2223 508 CDD AAA 291 409 - -
Sto13g2223 508 Gene3D - 259 430 IPR027417 -
Sto13g2223 508 ProSitePatterns AAA-protein family signature. 132 150 IPR003960 GO:0005524|GO:0016887
Sto13g2223 508 PANTHER BNAA03G50350D PROTEIN 3 507 - -
Sto13g2223 508 Gene3D - 1 162 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2223 Sto-Chr13 29083033 29089642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2223 3 236 Calmodulin-binding Proteins AT3G56690 31.780 1.59e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2223 K06027 - gmx:100779259 881.322