Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2214 ATGATGGAGATGAACACCACCACTCCTACTCCTACTCCTCCGAGAAGCACTGATCGAAAATTCATAGAGAGAAACCGAAGAAACCAAATGAAGGCTCTCTGCTCCAAGCTCAACTCCCTCCTCCCTCATCATCAAGCCTCAACGGATCAGGTGACACCGTCTGTGCCGGATCAGCTTGAGGAGGCGACGAGGTACATAAAGAAGCTTCAGATGAAGTTGGAGAAGCTGAGGGAGAAGAAACACATTCTAATGGGAATTAtggatcataataataataataataataatattgtggGGTCGAAATCACCCCAGATTGAGATCCACCATGTGGGTTCTGGGTTGGAGGTTGCTGTGACCACTGGATTGGATTCTCAGTTCATTTTCAATGAGATCCTTCGTGTTCTCCATGAAGAAGGTGCTGATATTGTTAGTGCCGCTTATACTGTTGTTGATGATGCAGTAGGAGAAGGTTCTGGAAACAGAGCAGTGAAGATATCAGAGAGATTGAAGAGATTTTTGTATGGTTCTGGAGGTGGATTTTGA 543 0.4309 MMEMNTTTPTPTPPRSTDRKFIERNRRNQMKALCSKLNSLLPHHQASTDQVTPSVPDQLEEATRYIKKLQMKLEKLREKKHILMGIMDHNNNNNNNIVGSKSPQIEIHHVGSGLEVAVTTGLDSQFIFNEILRVLHEEGADIVSAAYTVVDDAVGEGSGNRAVKISERLKRFLYGSGGGF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2214 180 MobiDBLite consensus disorder prediction 1 20 - -
Sto13g2214 180 SMART finulus 20 75 IPR011598 GO:0046983
Sto13g2214 180 MobiDBLite consensus disorder prediction 1 15 - -
Sto13g2214 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 154 IPR015660 GO:0003700|GO:0006357
Sto13g2214 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 88 IPR036638 GO:0046983
Sto13g2214 180 Coils Coil 59 86 - -
Sto13g2214 180 PANTHER TRANSCRIPTION FACTOR BHLH162 14 154 - -
Sto13g2214 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 69 IPR011598 GO:0046983
Sto13g2214 180 Pfam Helix-loop-helix DNA-binding domain 19 70 IPR011598 GO:0046983
Sto13g2214 180 Gene3D - 11 97 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2214 Sto-Chr13 29000221 29000990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2214 15 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 47.020 3.94e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2214 HLH 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2214 - - gmx:100784418 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2214 13 29000221 29000990 Sto13g2214 13 29000221 29000990 CCT