Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2207 ATGGCTGCTCCTTCTGCAGCTCTCAATTCCCTCTCCTCCCTCTCCCTTCCCGCTTCTTCCCGCTTCTCTCTCCTCCCCACCACCAAATTCACCTTCTCTCTCCTCTCCCGAACCCCACAACAACCCCCATTTCTCTCTACCTCCAAATCCAAATCCGCCGATGACATTGACACCTCCTTCTTCGATAATGTGAGCCCAGAAGAAGACGTCCCTTTCAACCCCCCAGAACCCCCCGAAGGCTTCGTTCCCCCTCCCGCCGTCGATGAGGGTCCCATGGAGTCGGAAGACGAAATAGCCGCTGCTTACGAGGAGCTCTATGGGCCAGCATACAGTGGCGTCACTGTTCTGGGCAACGATATATACGTGATGGACTCTAAGGTGAAGAAAGATACAGGGTTTGGTTCCAAGGCCAAGAAAGAGAAGGTTAAGGATGGATTTGAAGAAAGGGTAGTACAGGTGAGAAGAGTGACCAAGGTGGTTAAAGGAGGGAAGCAATTGCACTTCAGGGCGATTGTGGTTGTGGGTGACAAGAAAGGCCAAGTGGGTGTAGGAGTTGGGAAAGCCAAGGAGGTGATAGGCGCCGTTCAGAAATCAGCTGTAAATGCAAGGAGGAATATAATCACAGTGCCCATGACTAAGTACCTCACTTTCCCACACAGATCTGAGGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCTCCAGGTACTGGAGTTATTGCTGGTGGGTCTGTGAGAATTGTTCTAGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAACTGGGGAGCAATAATGCCCTCAACAATGCCAGAGCAACAGTTGTTGCTGTGCAGAAAATGAGGCAATTCCGTGAAGTTGCAGAGGAGCGAGGTATCCCTATGGAAGAACTATGGAAGTAA 909 0.5072 MAAPSAALNSLSSLSLPASSRFSLLPTTKFTFSLLSRTPQQPPFLSTSKSKSADDIDTSFFDNVSPEEDVPFNPPEPPEGFVPPPAVDEGPMESEDEIAAAYEELYGPAYSGVTVLGNDIYVMDSKVKKDTGFGSKAKKEKVKDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVIGAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFREVAEERGIPMEELWK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2207 302 Gene3D - 213 301 IPR014721 -
Sto13g2207 302 SUPERFAMILY dsRNA-binding domain-like 143 211 - -
Sto13g2207 302 Gene3D - 142 207 - -
Sto13g2207 302 MobiDBLite consensus disorder prediction 38 78 - -
Sto13g2207 302 Pfam Ribosomal protein S5, N-terminal domain 146 210 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto13g2207 302 PANTHER RIBOSOMAL S SUBUNIT 46 302 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto13g2207 302 ProSitePatterns Ribosomal protein S5 signature. 163 195 IPR018192 -
Sto13g2207 302 MobiDBLite consensus disorder prediction 38 59 - -
Sto13g2207 302 Pfam Ribosomal protein S5, C-terminal domain 223 293 IPR005324 GO:0003735|GO:0005840|GO:0006412
Sto13g2207 302 TIGRFAM rpsE_bact: ribosomal protein uS5 144 299 IPR005712 GO:0003735|GO:0006412|GO:0015935
Sto13g2207 302 SUPERFAMILY Ribosomal protein S5 domain 2-like 216 294 IPR020568 -
Sto13g2207 302 Hamap 30S ribosomal protein S5 [rpsE]. 123 299 IPR005712 GO:0003735|GO:0006412|GO:0015935
Sto13g2207 302 ProSiteProfiles S5 double stranded RNA-binding domain profile. 146 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto13g2207 302 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 46 302 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2207 146 286 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.872 6.26e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2207 K02988 - gmx:100787105 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2207 13 28925296 28927113 Sto13g2207 13 28925296 28927113 ECH