Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2206 ATGGGTTATCCCCAGAATCCCCATCCTGAGGCACTACATATGCATTCTTCTTTTCCAGAACCACCTAATTTGATTCCATGTAATTATCAAAGTATGCAATCACCATATATGTTTTCATTTCAGCATGTGAATCATAAACCTGTGGTTCAACCCATGGGACAGAATGATGTCCATTTTGGAATGCCAGATTGGCAACCACAAGGTTGGTCACATGATGATGAGAGAGCGTGGAAGAGCAAGATTGCTAGGGACAGAAGAAAGCAGGCACTACAGAGAAGCAGAAGTTCTAATTCTTCTGAAATTTGTGCTGCTTTAATCCCCCAAGCAAAGAGGGAAGTCCCTATTCGTCAAGAGACTAAAACCAAGAATCCTTATAAATTTTGCGCTCCAGATGGGAAGATGCTTAGAGACATATTGACAAAGAAATTAAGATCTTGCGACGTTGGCTCCCTAGGTCGCATTGTCCTCCCTAAGAAGGAAAGTGAGAAAAACCTTCCTGCCCTCCATAGCAGGGAGGGAATCCAAATTCTCCTCAAGGATGTTTTTTCCAACCAACATTGGAACATGAAATTCAAGTACTGGGCCAATGCCAATAGCAGAATGTACATACTTGAAAATACAGgagaatttataaaatattatcaattacAAATTGGAGATTCTATAACGCTCTATGAggataaacaaaaaaatctgTATGTGTCTGCGAGGAAgcagagagaagaagagagagaggcctcatcatcatcaaacaAAGAGGGGCATCAATCACAGAACACATACAACAACAGTAGTTACATACATGCTCCTTATTCGAATCAAgctaaagatgaagaagaagaagcatgtTTGGCTCTGTTAATAGAAGAGCTTAGGCATAAGGAGCAAGAAGAAGCTTCCAACTGCATTCGGAGTCTTTGCAGTGGTTGA 930 0.3656 MGYPQNPHPEALHMHSSFPEPPNLIPCNYQSMQSPYMFSFQHVNHKPVVQPMGQNDVHFGMPDWQPQGWSHDDERAWKSKIARDRRKQALQRSRSSNSSEICAALIPQAKREVPIRQETKTKNPYKFCAPDGKMLRDILTKKLRSCDVGSLGRIVLPKKESEKNLPALHSREGIQILLKDVFSNQHWNMKFKYWANANSRMYILENTGEFIKYYQLQIGDSITLYEDKQKNLYVSARKQREEEREASSSSNKEGHQSQNTYNNSSYIHAPYSNQAKDEEEEACLALLIEELRHKEQEEASNCIRSLCSG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2206 309 ProSiteProfiles B3 DNA-binding domain profile. 139 240 IPR003340 GO:0003677
Sto13g2206 309 SMART B3_2 139 240 IPR003340 GO:0003677
Sto13g2206 309 MobiDBLite consensus disorder prediction 236 272 - -
Sto13g2206 309 Pfam B3 DNA binding domain 141 239 IPR003340 GO:0003677
Sto13g2206 309 MobiDBLite consensus disorder prediction 236 250 - -
Sto13g2206 309 Gene3D - 128 249 IPR015300 -
Sto13g2206 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 8 306 - -
Sto13g2206 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 8 306 IPR044800 GO:0003700
Sto13g2206 309 MobiDBLite consensus disorder prediction 251 271 - -
Sto13g2206 309 CDD B3_DNA 138 234 IPR003340 GO:0003677
Sto13g2206 309 SUPERFAMILY DNA-binding pseudobarrel domain 139 245 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2206 Sto-Chr13 28920500 28924014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2206 47 291 B3 DNA Binding Superfamily AT1G28300 38.095 2.94e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto13g2206 B3 8.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2206 - - tcc:18596820 214.542