Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2205 ATGGAGAAAGATGAGGTGGGACATGTTTTGGCTGGAAAAGATGGAAACAAGCAGCAGGGAGATCATATGAATAGGAATAGCAAAAGTGAGGGACAGCAACAACCTCAGAAATGCCCTCGTTGTGACTCACTCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAGCCTCGCTACTTTTGTAAGTCATGTAGAAGGTACTGGACCCAAGGCGGAACCTTGAGAAACGTCCGCGTCGGAGGTGGCTGCCGCAAGCCCAAGCGCCTCAAAACCTCCGCTTcctcctccgccgccgccgACACCCCGCAAGACCCGGCGCTCCAAACTCAGCCTCCGCAGCCGATCACCCCCTTCTATcaaggcggcggcggcggtgggtATTTGTCGTCCCTAGCGGCGATTCAATCATCGCTGAGCCCATCTCAGCCGTTCAATTCGAATTTGAGTGGGCTGGGTGTGGGCCCTACTCCGCAGTTCTACGAAATGGGGATTGTGAGGGAAAGGGGGGAGGAGGAAGAGCCGTCGTCGACTCTGTACGAAACAGAGCAAGGTATGATGATGCAACAACAATCATCAACAACTACTTCGGCGGATCATAGCGGTTGGAGTGAGAGCTTCATCCACAATCATAATAACGGTAGCCAACGGGGTGGATCTGAGGCGTCGACTTTGTGGAGTACAGCTGTGAGTACTAGTACTCCCACCACAACTAGTGCTAATTGTGAGAGTTTCATCTCTTTGATCCCCAATCATCACTGGCCTCATCTTCCTGGCTACGATCCTCCTCCGTAA 798 0.4862 MEKDEVGHVLAGKDGNKQQGDHMNRNSKSEGQQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVRVGGGCRKPKRLKTSASSSAAADTPQDPALQTQPPQPITPFYQGGGGGGYLSSLAAIQSSLSPSQPFNSNLSGLGVGPTPQFYEMGIVRERGEEEEPSSTLYETEQGMMMQQQSSTTTSADHSGWSESFIHNHNNGSQRGGSEASTLWSTAVSTSTPTTTSANCESFISLIPNHHWPHLPGYDPPP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2205 265 MobiDBLite consensus disorder prediction 83 123 - -
Sto13g2205 265 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 97 IPR045174 GO:0003700|GO:0006355
Sto13g2205 265 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 104 264 IPR045174 GO:0003700|GO:0006355
Sto13g2205 265 MobiDBLite consensus disorder prediction 170 238 - -
Sto13g2205 265 MobiDBLite consensus disorder prediction 180 238 - -
Sto13g2205 265 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
Sto13g2205 265 MobiDBLite consensus disorder prediction 1 38 - -
Sto13g2205 265 MobiDBLite consensus disorder prediction 91 108 - -
Sto13g2205 265 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Sto13g2205 265 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 15 97 - -
Sto13g2205 265 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 104 264 - -
Sto13g2205 265 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2205 Sto-Chr13 28908813 28910047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2205 32 104 C2C2-Dof Transcription Factor Family AT5G60850 72.973 1.01e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto13g2205 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2205 - - gmx:102668884 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2205 13 28908813 28910047 Sto13g2205 13 28908813 28910047 CCT
Sto13g2205 13 28908813 28910047 Sto13g2205 13 28908813 28910047 ECH