Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2203 ATGGCAAACGCAGTTGCGAAGATTTTCCACTTCATCCTGCATCAGTACAAGTTTGgaggaggaggagaagatggaataaggaagaagatgagagaTGTATACAGGAAGCAGAGAggctcatcatcttcttcttcttcatcaatgGCACCTTCATGTCAAGTGGAAAACTGTGAGAATGATCTGAGAGAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACGCCAAATCGCCGTCCGTACTCATTGCCGGCTTGCACCAACGCTTCTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAGTTTGATGACACGAAAAAGAGCTGTAGGAAGCGTTTGGCTGGACACAACGAGAGGCGTCGAAAGAGTGCATCTAATTATGGTGGAGATGCATTTCATTAA 411 0.4039 MANAVAKIFHFILHQYKFGGGGEDGIRKKMRDVYRKQRGSSSSSSSSMAPSCQVENCENDLREAKHYHRRHKVCEFHAKSPSVLIAGLHQRFCQQCSRFHEVSEFDDTKKSCRKRLAGHNERRRKSASNYGGDAFH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2203 136 Pfam SBP domain 52 125 IPR004333 GO:0003677
Sto13g2203 136 MobiDBLite consensus disorder prediction 117 136 - -
Sto13g2203 136 SUPERFAMILY SBT domain 50 129 IPR036893 GO:0003677|GO:0005634
Sto13g2203 136 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Sto13g2203 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 128 IPR044817 GO:0003677
Sto13g2203 136 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Sto13g2203 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 36 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2203 Sto-Chr13 28885112 28897927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2203 33 129 SBP-box Gene Family AT2G33810 63.918 1.78e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto13g2203 SBP 3.2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2203 13 28885112 28897927 Sto13g2203 13 28885112 28897927 ECH
Sto7g0234 7 1676155 1676762 Sto13g2203 13 28885112 28897927 ECH
Sto4g2841 4 29159672 29160783 Sto13g2203 13 28885112 28897927 ECH
Sto7g0509 7 3757882 3758407 Sto13g2203 13 28885112 28897927 ECH