Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2199 ATGTTTAAACTTAACACAGATGGTTTGCGTGATTCTGATTCGAGTTTCATTGCTGCAGGTGGTGTTCTTAAGGACAATCTTAGTTGTTGGAAGAAAggtttttcaaaatttctggGTACTAGTAACATTATTCTGGTAATCAATGATGCGCTATTGCCTGCATCATCACCCATTGCGCAGCGCCATCGACAGTGGCAGTGCTGTGGTTGTGGTGTTGCCAATTTCGTTTTGCTCAGTCATCACACACGCTATCTTCACAATGTGCCATTGCCTTGGCATGCACTATTCGATTTGAGCCAACATAAGGAGTCTGAAGAGGCAGAGAGGAACTTGAGGCCAGTTTCCTCTGTGGCAGAAAACCCTAATATAGTCTCTGTGGAAAAGAATGACTCGTGTAATATTCTTACAACAAAAGAGGAAGATTTTCACCTGAATAACGTAACTTCAGGCAGTCCAAATTCAAGAGATATTGGGGTTAGTGCTGAAGATAATAAACTTCAAGGCTTAGATGTCAACATTCAAAATAATGGATCCCCTCTACAGAGTAAAACATGTGGAGGATACAGTGAAGCAAGTTGTGATAGCAAAGCTTGTGGTGTTAAAAATATGGATTCTGGGACAGCTAAGGCATCTAGTGATATTGGAAAAGATGTGGGTGTGGCTATTGACTTCCTGCAGAGAGACTGCATTCTTGAGGACGCTAATGTTGGCACTCAGAATTCTATGAACCAAACTAAGCAGTTGGAGATGCAGTCAGGGGATGAAATGAAGCAAATGACATCAAGATTTACTTCCCCTGATATTAGGACTAGGAGTCTGTCTCCCAGTGCTGAGATGAAAGATGGAAACAAGCGgccagcaattatatgcaacttTTTTGCTCAAGGATGGTGCATCAGAGGTAGTTCATGTAGGTTTCTTCATATAAAAGATCACGTCAATAATTCTGACCAGCTGGCTGAAGGAGACTTGGTCACTAAAAATTTGAAGAGAGAAGTGCAACTGGAGGAagGTCTTAGAGACAATGCTGTGGCCATCCAAGATGAGCAAGCAAGCCCAGGTCGGCATCTATCTAAAGATAAACAAAAGTTGCCATTGCATCTTAAAGAAGATTTATCCTCTAAGAATCATGCCTTACCAATTGGTAGAGATGGCTCTACATTGAGAGACAACTTGTTTCCTCAAGATAGATCTATGCTTAATGCATCAAGAAACAATTTCAACATGAATCTCTCTTCCTATCCACCCTGCACCGAGGGATTGGCTACTGTTCAAAGACAAcatatatacaataaatataCTTCCCCTGTTATGAGTCATTCTCCTAATTCAACATTGGTTAGTCACCCTGCTACAAGCATGTCATTATCCCACCAAATTGCAGCCCCGTCAggttattcattttcttttaattcatcTGTTGGTGCAAGCACTTTGGATGCCCAAAAGCTGTTGAACAATGGCAAAGAATATAATCCATCTGGGGTTTCGCTCCTTGCCACTAGATATAAAACTAAAATCTCTTCTTACGATTGGGAGCCTTCTATACCTTTTCGACCATCATTTTTTATTACTCCAACTTGTATGTCATCTCCTGGAGATCTGTATGACCCTTTTCATCCTAGTGTAGAGATACCCAATATAGGAGATGGATCCTTGAAAGCTTCCTTTTTTATTCATGGGCCTCCCATCCAGGCTTCATCTCAGCGGACATATGGTGAGAATTCTGTAGCTGGGGACAAGGTGACAGATCATAACGAGGACAAAAGTTCTGTGTCTTCTCATAATAGATTTTATGAGAATGAGTCAAACAGGAGTTGTGCTCCTTGTGAAAAAGATTGTCTTGCACCTGAAACAGAGACAACAGCCAGAACCTTTCGAAGCTCCCATAATGGTAAATCAGGCGTTGGAGAAAATACCCTTGCTATTGAAGATATCACAAAAACTGAAAATGAAAGGACTGAGCATAGTGGAAGACATCAAGGTGAAGGATTGGAACATAACAAGAAGAGAGTTGACAGGGTTAAGAAAAACAATGAAATGCATGCTGACTTTCAGATGGATAGTGAAGTGCAGAATGATTTGAAGGCTCTAAGAAATTTTCGTGCGGCTCTTGTAGATTTAGTGAAAGACTTGTTAAAACCATCTTGGCATGAAGGTCGTCTCAGCAAGGATGCACATAATACAATAGTTAAGAAATCGGTTGACAAGGTTATAAGCACCTTACAGCCCCACCAGCTTCCAACCACCATAAATATGGTTAACCACTATGTTTCTTCATCTCGGTCGAAAATTGCGAAGCTTGTTGATTCGAGGTTGATAGGGAATGCTTCAAATTTTCTTTCAGGATGTTTGCTTCATGTTCTATCCTTGCTTTTTATTGCTGCTTCCATTCTCAAATCAGCAGGTGTGAACTTCACTGGATTGGCAGCAGAATTCGAGTTTGATCTAGTGCTAGAAAATTCAAATTCTGGGTCTGTATTGTTTTCTTGGTTAGGAGGAGGGGACTTTGGTTTTTGCTTTGCTCAAGTGACTGATTCTACGAGGATGATCAGTGAATGTATTGAATTGATAGATGAATAG 2583 0.3972 MFKLNTDGLRDSDSSFIAAGGVLKDNLSCWKKGFSKFLGTSNIILVINDALLPASSPIAQRHRQWQCCGCGVANFVLLSHHTRYLHNVPLPWHALFDLSQHKESEEAERNLRPVSSVAENPNIVSVEKNDSCNILTTKEEDFHLNNVTSGSPNSRDIGVSAEDNKLQGLDVNIQNNGSPLQSKTCGGYSEASCDSKACGVKNMDSGTAKASSDIGKDVGVAIDFLQRDCILEDANVGTQNSMNQTKQLEMQSGDEMKQMTSRFTSPDIRTRSLSPSAEMKDGNKRPAIICNFFAQGWCIRGSSCRFLHIKDHVNNSDQLAEGDLVTKNLKREVQLEEGLRDNAVAIQDEQASPGRHLSKDKQKLPLHLKEDLSSKNHALPIGRDGSTLRDNLFPQDRSMLNASRNNFNMNLSSYPPCTEGLATVQRQHIYNKYTSPVMSHSPNSTLVSHPATSMSLSHQIAAPSGYSFSFNSSVGASTLDAQKLLNNGKEYNPSGVSLLATRYKTKISSYDWEPSIPFRPSFFITPTCMSSPGDLYDPFHPSVEIPNIGDGSLKASFFIHGPPIQASSQRTYGENSVAGDKVTDHNEDKSSVSSHNRFYENESNRSCAPCEKDCLAPETETTARTFRSSHNGKSGVGENTLAIEDITKTENERTEHSGRHQGEGLEHNKKRVDRVKKNNEMHADFQMDSEVQNDLKALRNFRAALVDLVKDLLKPSWHEGRLSKDAHNTIVKKSVDKVISTLQPHQLPTTINMVNHYVSSSRSKIAKLVDSRLIGNASNFLSGCLLHVLSLLFIAASILKSAGVNFTGLAAEFEFDLVLENSNSGSVLFSWLGGGDFGFCFAQVTDSTRMISECIELIDE 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2199 860 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 308 IPR000571 GO:0046872
Sto13g2199 860 MobiDBLite consensus disorder prediction 649 671 - -
Sto13g2199 860 MobiDBLite consensus disorder prediction 568 598 - -
Sto13g2199 860 MobiDBLite consensus disorder prediction 250 280 - -
Sto13g2199 860 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 99 770 - -
Sto13g2199 860 MobiDBLite consensus disorder prediction 580 595 - -
Sto13g2199 860 ProSiteProfiles Zinc finger C3H1-type profile. 284 311 IPR000571 GO:0046872
Sto13g2199 860 SUPERFAMILY CCCH zinc finger 284 308 IPR036855 GO:0046872
Sto13g2199 860 Gene3D - 276 337 - -
Sto13g2199 860 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 99 770 - -
Sto13g2199 860 MobiDBLite consensus disorder prediction 250 272 - -
Sto13g2199 860 SMART c3hfinal6 284 310 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2199 Sto-Chr13 28854095 28862534 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g2199 zf-CCCH 9.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2199 - - aprc:113872594 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2199 13 28854095 28862534 Sto13g2199 13 28854095 28862534 ECH